Package: qcumber / 1.0.14+dfsg-1

adapt_config.patch Patch series | download
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Author: Andreas Tille <TilleA@rki.de>
Last-Update: Wed, 16 Mar 2016 11:01:55 +0100
Description: Use Debian packaged locations

--- a/config.txt
+++ b/config.txt
@@ -1,10 +1,10 @@
 [DEFAULT]
-kraken_db = /opt/common/pipelines/databases/minikraken_20141208/
+kraken_db = /var/lib/kraken/minikraken_20141208
 
 [PATH]
 kraken =
-adapter = /opt/common/pipelines/tools/Trimmomatic-0.36/adapters/
-fastqc = /opt/common/pipelines/tools/FastQC_0.11.5/
-trimmomatic = /opt/common/pipelines/tools/Trimmomatic-0.36/
+adapter = /usr/share/trimmomatic/
+fastqc = 
+trimmomatic = /usr/bin
 bowtie2 =