CMakeLists.txt | 32 0 + 32 - 0 !
src/CMakeLists.txt | 4 2 + 2 - 0 !
2 files changed, 2 insertions(+), 34 deletions(-)

 make rapmap use debian's versions of dependencies
 This involves disabling downloads and adjusting API usage to the versions
 packaged in Debian.

CMakeLists.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 prefer dynamic to static libraries

README.md | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 avoid privacy breach by pointing to pre-fetched copy of the image in question

include/spdlog/details/async_log_helper.h | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix typo: exeption  exception

include/FastxParserThreadUtils.hpp | 21 20 + 1 - 0 !
1 file changed, 20 insertions(+), 1 deletion(-)

 add portable pauses

CMakeLists.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 avoid unnecessary linkage to gomp or rt

src/CMakeLists.txt | 34 25 + 9 - 0 !
src/ksw2pp/KSW2Aligner.cpp | 4 3 + 1 - 0 !
src/ksw2pp/ksw2_extd2_sse.c | 85 4 + 81 - 0 !
src/ksw2pp/ksw2_extf2_sse.c | 26 5 + 21 - 0 !
src/ksw2pp/ksw2_exts2_sse.c | 79 4 + 75 - 0 !
src/ksw2pp/ksw2_extz2_sse.c | 55 4 + 51 - 0 !
src/ksw2pp/ksw2_gg2_sse.c | 16 2 + 14 - 0 !
src/metro/metrohash128crc.cpp | 3 2 + 1 - 0 !
8 files changed, 49 insertions(+), 253 deletions(-)

 add non-x86 portability using simd everywhere