Package: raxml / 8.2.13+dfsg-2

Metadata

Package Version Patches format
raxml 8.2.13+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
simde | (download)

Makefile.AVX.PTHREADS.gcc | 4 2 + 2 - 0 !
avxLikelihood.c | 272 135 + 137 - 0 !
axml.c | 15 4 + 11 - 0 !
bipartitionList.c | 8 3 + 5 - 0 !
evaluateGenericSpecial.c | 9 3 + 6 - 0 !
evaluatePartialGenericSpecial.c | 8 3 + 5 - 0 !
fastDNAparsimony.c | 20 5 + 15 - 0 !
makenewzGenericSpecial.c | 11 3 + 8 - 0 !
newviewGenericSpecial.c | 13 3 + 10 - 0 !
9 files changed, 161 insertions(+), 199 deletions(-)

 enable building on non-x86 via the simde library
https://github.com/stamatak/standard-RAxML/pull/50

hardening | (download)

Makefile.AVX.PTHREADS.gcc | 11 7 + 4 - 0 !
Makefile.PTHREADS.gcc | 6 3 + 3 - 0 !
Makefile.SSE3.PTHREADS.gcc | 8 4 + 4 - 0 !
3 files changed, 14 insertions(+), 11 deletions(-)

 improve the build hardening
c23.patch | (download)

rmq.h | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 fix build failure with standard c 2023.
 The type bool is already defined starting with standard C 2023, so it
 is necessary to check for an old standard level before defining the
 type.
typos.patch | (download)

axml.c | 32 16 + 16 - 0 !
fastSearch.c | 2 1 + 1 - 0 !
parsePartitions.c | 2 1 + 1 - 0 !
3 files changed, 18 insertions(+), 18 deletions(-)

 fix typos caught by lintian.
interpreter path.patch | (download)

usefulScripts/ProteinModelSelection.pl | 2 1 + 1 - 0 !
usefulScripts/applyRAxML2AllFilesInDirectory.pl | 2 1 + 1 - 0 !
usefulScripts/bsBranchLengths.pl | 2 1 + 1 - 0 !
3 files changed, 3 insertions(+), 3 deletions(-)

 adjust perl interpreter path.