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Author: Andreas Tille <tille@debian.org>
LastChanged: Mon, 18 Nov 2013 14:22:50 +0100
Description: Make sure the just builded readseq will be used for testing
--- a/Makefile
+++ b/Makefile
@@ -53,41 +53,41 @@ build: $(SOURCES)
test:
@echo ""
@echo "Test for general read/write of all chars:"
- readseq -p alphabet.std -otest.alpha
+ ./readseq -p alphabet.std -otest.alpha
-diff test.alpha alphabet.std
@echo ""
@echo "Test for valid format conversions:"
- readseq -v -p -f=ig nucleic.std -otest.ig
- readseq -v -p -f=gb test.ig -otest.gb
- readseq -v -p -f=nbrf test.gb -otest.nbrf
- readseq -v -p -f=embl test.nbrf -otest.embl
- readseq -v -p -f=gcg test.embl -otest.gcg
- readseq -v -p -f=strider test.gcg -otest.strider
- readseq -v -p -f=fitch test.strider -otest.fitch
- readseq -v -p -f=fasta test.fitch -otest.fasta
- readseq -v -p -f=pir test.fasta -otest.pir
- readseq -v -p -f=ig test.pir -otest.ig-b
+ ./readseq -v -p -f=ig nucleic.std -otest.ig
+ ./readseq -v -p -f=gb test.ig -otest.gb
+ ./readseq -v -p -f=nbrf test.gb -otest.nbrf
+ ./readseq -v -p -f=embl test.nbrf -otest.embl
+ ./readseq -v -p -f=gcg test.embl -otest.gcg
+ ./readseq -v -p -f=strider test.gcg -otest.strider
+ ./readseq -v -p -f=fitch test.strider -otest.fitch
+ ./readseq -v -p -f=fasta test.fitch -otest.fasta
+ ./readseq -v -p -f=pir test.fasta -otest.pir
+ ./readseq -v -p -f=ig test.pir -otest.ig-b
-diff test.ig test.ig-b
@echo ""
@echo "Test for multiple-sequence format conversions:"
- readseq -p -f=ig multi.std -otest.m-ig
- readseq -p -f=gb test.m-ig -otest.m-gb
- readseq -p -f=nbrf test.m-gb -otest.m-nbrf
- readseq -p -f=embl test.m-nbrf -otest.m-embl
- readseq -p -f=fasta test.m-embl -otest.m-fasta
- readseq -p -f=pir test.m-fasta -otest.m-pir
- readseq -p -f=msf test.m-pir -otest.m-msf
- readseq -p -f=paup test.m-msf -otest.m-paup
- readseq -p -f=ig test.m-paup -otest.m-ig-b
+ ./readseq -p -f=ig multi.std -otest.m-ig
+ ./readseq -p -f=gb test.m-ig -otest.m-gb
+ ./readseq -p -f=nbrf test.m-gb -otest.m-nbrf
+ ./readseq -p -f=embl test.m-nbrf -otest.m-embl
+ ./readseq -p -f=fasta test.m-embl -otest.m-fasta
+ ./readseq -p -f=pir test.m-fasta -otest.m-pir
+ ./readseq -p -f=msf test.m-pir -otest.m-msf
+ ./readseq -p -f=paup test.m-msf -otest.m-paup
+ ./readseq -p -f=ig test.m-paup -otest.m-ig-b
-diff test.m-ig test.m-ig-b
#
# if using NCBI, uncomment these lines
@echo ""
@echo "Test of NCBI ASN.1 conversions:"
- readseq -p -f=asn test.m-ig -otest.m-asn
- readseq -p -f=ig test.m-asn -otest.m-ig-c
+ ./readseq -p -f=asn test.m-ig -otest.m-asn
+ ./readseq -p -f=ig test.m-asn -otest.m-ig-c
-diff test.m-ig test.m-ig-c
#
@echo ""
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