Package: readseq / 1-11

enable_tests.patch Patch series | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
Author: Andreas Tille <tille@debian.org>
LastChanged: Mon, 18 Nov 2013 14:22:50 +0100
Description: Make sure the just builded readseq will be used for testing

--- a/Makefile
+++ b/Makefile
@@ -53,41 +53,41 @@ build: $(SOURCES)
 test: 
 	@echo ""
 	@echo "Test for general read/write of all chars:"
-	readseq -p alphabet.std -otest.alpha
+	./readseq -p alphabet.std -otest.alpha
 	-diff test.alpha alphabet.std
 
 	@echo ""
 	@echo "Test for valid format conversions:"
-	readseq -v -p -f=ig   nucleic.std -otest.ig
-	readseq -v -p -f=gb   test.ig     -otest.gb
-	readseq -v -p -f=nbrf test.gb     -otest.nbrf
-	readseq -v -p -f=embl test.nbrf   -otest.embl
-	readseq -v -p -f=gcg  test.embl   -otest.gcg
-	readseq -v -p -f=strider test.gcg -otest.strider
-	readseq -v -p -f=fitch test.strider -otest.fitch
-	readseq -v -p -f=fasta test.fitch -otest.fasta
-	readseq -v -p -f=pir  test.fasta  -otest.pir
-	readseq -v -p -f=ig   test.pir    -otest.ig-b
+	./readseq -v -p -f=ig   nucleic.std -otest.ig
+	./readseq -v -p -f=gb   test.ig     -otest.gb
+	./readseq -v -p -f=nbrf test.gb     -otest.nbrf
+	./readseq -v -p -f=embl test.nbrf   -otest.embl
+	./readseq -v -p -f=gcg  test.embl   -otest.gcg
+	./readseq -v -p -f=strider test.gcg -otest.strider
+	./readseq -v -p -f=fitch test.strider -otest.fitch
+	./readseq -v -p -f=fasta test.fitch -otest.fasta
+	./readseq -v -p -f=pir  test.fasta  -otest.pir
+	./readseq -v -p -f=ig   test.pir    -otest.ig-b
 	-diff test.ig test.ig-b
 
 	@echo ""
 	@echo "Test for multiple-sequence format conversions:"
-	readseq -p -f=ig    multi.std   -otest.m-ig
-	readseq -p -f=gb    test.m-ig   -otest.m-gb
-	readseq -p -f=nbrf  test.m-gb   -otest.m-nbrf
-	readseq -p -f=embl  test.m-nbrf -otest.m-embl
-	readseq -p -f=fasta test.m-embl -otest.m-fasta
-	readseq -p -f=pir   test.m-fasta -otest.m-pir
-	readseq -p -f=msf   test.m-pir  -otest.m-msf
-	readseq -p -f=paup  test.m-msf  -otest.m-paup
-	readseq -p -f=ig    test.m-paup -otest.m-ig-b
+	./readseq -p -f=ig    multi.std   -otest.m-ig
+	./readseq -p -f=gb    test.m-ig   -otest.m-gb
+	./readseq -p -f=nbrf  test.m-gb   -otest.m-nbrf
+	./readseq -p -f=embl  test.m-nbrf -otest.m-embl
+	./readseq -p -f=fasta test.m-embl -otest.m-fasta
+	./readseq -p -f=pir   test.m-fasta -otest.m-pir
+	./readseq -p -f=msf   test.m-pir  -otest.m-msf
+	./readseq -p -f=paup  test.m-msf  -otest.m-paup
+	./readseq -p -f=ig    test.m-paup -otest.m-ig-b
 	-diff test.m-ig test.m-ig-b
 #
 # if using NCBI, uncomment these lines
 	@echo ""
 	@echo "Test of NCBI ASN.1 conversions:"
-	readseq -p -f=asn test.m-ig  -otest.m-asn
-	readseq -p -f=ig  test.m-asn -otest.m-ig-c
+	./readseq -p -f=asn test.m-ig  -otest.m-asn
+	./readseq -p -f=ig  test.m-asn -otest.m-ig-c
 	-diff test.m-ig test.m-ig-c
 #
 	@echo ""