Formats | 16 16 + 0 - 0 !
1 file changed, 16 insertions(+)

 add new formats for arb

Makefile | 92 52 + 40 - 0 !
1 file changed, 52 insertions(+), 40 deletions(-)

 enhanced makefile

readseq.c | 53 50 + 3 - 0 !
ureadseq.c | 226 219 + 7 - 0 !
ureadseq.h | 6 4 + 2 - 0 !
3 files changed, 273 insertions(+), 12 deletions(-)

 several patches for arb that enable new formats and contain other 
             needed fixes

ureadseq.c | 62 31 + 31 - 0 !
1 file changed, 31 insertions(+), 31 deletions(-)

 fixes error: conflicting types for 'getline' problem (#552830)

readseq.c | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 when using -werror=format-security with gcc-4.6 some function
 calls are throwing erros.  This patch replates [f]printf by [f]puts to
 fix the problem

Makefile | 44 22 + 22 - 0 !
1 file changed, 22 insertions(+), 22 deletions(-)

 make sure the just builded readseq will be used for testing

Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 propagate hardening options

ureadseq.c | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix buffer overflow in ureadseq.c

Makefile | 16 11 + 5 - 0 !
alphabet.std | 2 1 + 1 - 0 !
2 files changed, 12 insertions(+), 6 deletions(-)

 fix a checksum in alphabet.std (see how the file was generated in
Stdfiles). Turn off a testing of NCBI ASN.1 conversions and indicate that it
works improperly.

readseq.c | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 fix gets invocations.
 gets(3) manual page explicitly mentions to not make use of this function
 anymore.  This patch replaces their invocations to fgets instead, with a
 hardcoded size allocation.  This is not pretty perhaps, but way better than
 the unbound gets invocations.

ureadseq.c | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix build failure with gcc-15.