Package: rna-star / 2.7.8a+dfsg-2

Metadata

Package Version Patches format
rna-star 2.7.8a+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
donotuse_own_htslib.patch | (download)

source/BAMfunctions.cpp | 2 1 + 1 - 0 !
source/IncludeDefine.h | 4 2 + 2 - 0 !
source/Makefile | 19 6 + 13 - 0 !
source/STAR.cpp | 2 1 + 1 - 0 !
source/bamRemoveDuplicates.cpp | 2 1 + 1 - 0 !
source/bam_cat.c | 4 2 + 2 - 0 !
source/bam_cat.h | 2 1 + 1 - 0 !
source/signalFromBAM.h | 2 1 + 1 - 0 !
8 files changed, 15 insertions(+), 22 deletions(-)

 use debian packaged htslib
mips_shm_noreserve.patch | (download)

source/IncludeDefine.h | 4 4 + 0 - 0 !
1 file changed, 4 insertions(+)

 resolves build issue for mipsel, until this issue gets fixed in glibc

reproducible.patch | (download)

source/Makefile | 9 8 + 1 - 0 !
1 file changed, 8 insertions(+), 1 deletion(-)

 make build reproducible
 Stops build hostname and directory from being recorded in the artifact.
mathRoutinesNotInScope.patch | (download)

source/Genome_genomeLoad.cpp | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

---
simde.patch | (download)

source/Makefile | 20 10 + 10 - 0 !
source/opal/opal.cpp | 3 2 + 1 - 0 !
2 files changed, 12 insertions(+), 11 deletions(-)

 use simde instead of intel intrinsics