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Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Description: accept the hardening flags
--- rsem.orig/Makefile
+++ rsem/Makefile
@@ -12,11 +12,11 @@
# Compilation variables
CXX = g++
-CXXFLAGS = -std=gnu++98 -Wall -I. -I$(BOOST) -I$(SAMTOOLS)/$(HTSLIB)
-CPPFLAGS =
+CXXFLAGS += -std=gnu++98 -Wall -I. -I$(BOOST) -I$(SAMTOOLS)/$(HTSLIB)
+CPPFLAGS ?=
-LDFLAGS =
-LDLIBS =
+LDFLAGS ?=
+LDLIBS ?=
# Installation variables
INSTALL = install
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