Makefile | 8 4 + 4 - 0 !
1 file changed, 4 insertions(+), 4 deletions(-)

 accept the hardening flags

Makefile | 22 9 + 13 - 0 !
1 file changed, 9 insertions(+), 13 deletions(-)

 use debian packaged samtools

pRSEM/Gene.py | 4 2 + 2 - 0 !
pRSEM/Param.py | 4 2 + 2 - 0 !
pRSEM/Prsem.py | 8 4 + 4 - 0 !
pRSEM/Transcript.py | 8 4 + 4 - 0 !
pRSEM/Util.py | 6 3 + 3 - 0 !
pRSEM/prsem-calculate-expression | 2 1 + 1 - 0 !
pRSEM/prsem-prepare-reference | 2 1 + 1 - 0 !
pRSEM/prsem-testing-procedure | 2 1 + 1 - 0 !
rsem-gff3-to-gtf | 2 1 + 1 - 0 !
rsem-refseq-extract-primary-assembly | 2 1 + 1 - 0 !
10 files changed, 20 insertions(+), 20 deletions(-)

 use 2to3 to port to python3
Bug-Debian: https://bugs.debian.org/938415