Package: sagemath / 8.2-5

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Package Version Patches format
sagemath 8.2-5 3.0 (quilt)

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Patch File delta Description
u0 version numpy 1.14.3.patch #25260 | (download)

sage/src/doc/en/faq/faq-usage.rst | 2 1 + 1 - 0 !
sage/src/doc/en/thematic_tutorials/numerical_sage/cvxopt.rst | 12 7 + 5 - 0 !
sage/src/doc/en/thematic_tutorials/numerical_sage/numpy.rst | 67 34 + 33 - 0 !
sage/src/sage/calculus/riemann.pyx | 48 24 + 24 - 0 !
sage/src/sage/combinat/fully_packed_loop.py | 10 5 + 5 - 0 !
sage/src/sage/finance/time_series.pyx | 8 4 + 4 - 0 !
sage/src/sage/functions/hyperbolic.py | 8 4 + 4 - 0 !
sage/src/sage/functions/orthogonal_polys.py | 16 8 + 8 - 0 !
sage/src/sage/functions/other.py | 6 3 + 3 - 0 !
sage/src/sage/functions/trig.py | 12 6 + 6 - 0 !
sage/src/sage/matrix/constructor.pyx | 4 2 + 2 - 0 !
sage/src/sage/matrix/matrix_double_dense.pyx | 14 7 + 7 - 0 !
sage/src/sage/matrix/special.py | 4 2 + 2 - 0 !
sage/src/sage/modules/free_module_element.pyx | 4 2 + 2 - 0 !
sage/src/sage/modules/vector_double_dense.pyx | 10 5 + 5 - 0 !
sage/src/sage/numerical/optimize.py | 4 2 + 2 - 0 !
sage/src/sage/plot/complex_plot.pyx | 18 9 + 9 - 0 !
sage/src/sage/plot/line.py | 8 3 + 5 - 0 !
sage/src/sage/plot/plot_field.py | 7 4 + 3 - 0 !
sage/src/sage/plot/streamline_plot.py | 16 7 + 9 - 0 !
sage/src/sage/probability/probability_distribution.pyx | 12 11 + 1 - 0 !
sage/src/sage/rings/rational.pyx | 2 1 + 1 - 0 !
sage/src/sage/rings/real_mpfr.pyx | 2 1 + 1 - 0 !
sage/src/sage/schemes/elliptic_curves/height.py | 16 8 + 8 - 0 !
sage/src/sage/symbolic/ring.pyx | 2 1 + 1 - 0 !
25 files changed, 161 insertions(+), 151 deletions(-)

 fix doctests with new numpy version
u0 version pynac 0.7.19.patch #24838 | (download)

sage/src/sage/calculus/calculus.py | 2 1 + 1 - 0 !
sage/src/sage/functions/log.py | 10 5 + 5 - 0 !
sage/src/sage/functions/trig.py | 24 8 + 16 - 0 !
sage/src/sage/geometry/hyperbolic_space/hyperbolic_geodesic.py | 6 4 + 2 - 0 !
sage/src/sage/libs/pynac/pynac.pyx | 2 1 + 1 - 0 !
sage/src/sage/matrix/matrix_symbolic_dense.pyx | 2 1 + 1 - 0 !
sage/src/sage/modules/matrix_morphism.py | 4 2 + 2 - 0 !
sage/src/sage/plot/plot.py | 2 1 + 1 - 0 !
sage/src/sage/repl/display/formatter.py | 10 5 + 5 - 0 !
sage/src/sage/stats/basic_stats.py | 2 1 + 1 - 0 !
sage/src/sage/symbolic/expression.pyx | 16 10 + 6 - 0 !
sage/src/sage/symbolic/relation.py | 2 1 + 1 - 0 !
12 files changed, 40 insertions(+), 42 deletions(-)

 24838: doctest fixes


u0 version sphinx 1.7.patch #24935 | (download)

sage/src/sage/misc/sphinxify.py | 6 3 + 3 - 0 !
sage/src/sage_setup/docbuild/sphinxbuild.py | 2 1 + 1 - 0 !
2 files changed, 4 insertions(+), 4 deletions(-)

 upgrade to sphinx 1.7.1


u0 version pbori boost1.62 hashes.patch #22243 | (download)

sage/src/sage/rings/polynomial/pbori.pyx | 12 6 + 6 - 0 !
1 file changed, 6 insertions(+), 6 deletions(-)

 change expected brial hashes for change in hash_combine in boost 1.62
 The hash function for boost::hash_combine() which is called in 
 libbrial/include/polybori/routines/pbori_routines_hash.h was changed for
 boost 1.62 in the commit
 https://github.com/boostorg/functional/commit/45eeb170f2b1372b4b5e52744d3c51eddb285b42
 .
 Therefore the hashes changed. For the same reason brial in Debian has the patch
 testsuite-boost-1.62.patch.
u0 version networkx 2.1.patch #24374 | (download)

sage/src/sage/combinat/permutation.py | 1 1 + 0 - 0 !
sage/src/sage/graphs/base/graph_backends.pyx | 768 17 + 751 - 0 !
sage/src/sage/graphs/bipartite_graph.py | 15 10 + 5 - 0 !
sage/src/sage/graphs/digraph.py | 37 7 + 30 - 0 !
sage/src/sage/graphs/generators/degree_sequence.py | 28 12 + 16 - 0 !
sage/src/sage/graphs/generators/families.py | 33 12 + 21 - 0 !
sage/src/sage/graphs/generic_graph.py | 126 100 + 26 - 0 !
sage/src/sage/graphs/graph.py | 38 20 + 18 - 0 !
8 files changed, 179 insertions(+), 867 deletions(-)

 upgrade networkx to version 2.1

doctest pass but I would not be surprised if some things are broken now. There
are a lot of subtle changes in networkx and not all code paths are doctested I
believe.

Some more comments:

* I simplified the SPKG.txt as the changelog has not been mantained for a few
  years it seems. Also, I am not sure whether the dependencies section is
  actually useful; numpy and scipy are not hard dependencies. Furthermore, I
  did not drop src/doc/data as mentioned in the SPKG.txt as I do not see why we
  should mutilate the source package.

* I upgraded copyright headers. When there were no copyright headers at all, I
  added new ones and seeded them with everyone in the git history of the file.
  The lists of authors are really lengthy but a lot of people have made little
  changes to these files.

* I dropped NetworkXGraphBackend as it is not used anywhere. There might still
  be some pickles around that use this? If so, then we should try to upgrade
  them on unpickling.

* The recursive topsort has disappeared it seems.

* The balanced tree implementation now raises errors if you feed it invalid
  heights or degrees.

u0 fix dont require DISPLAY.patch #22441 | (download)

sage/src/sage/plot/plot.py | 1 1 + 0 - 0 !
sage/src/sage/probability/probability_distribution.pyx | 1 1 + 0 - 0 !
2 files changed, 2 insertions(+)

 don't fail plot.py doctest if display is unset
 https://stackoverflow.com/questions/37604289/tkinter-tclerror-no-display-name-and-no-display-environment-variable
u0 reproducible docs.patch #25093 | (download)

sage/src/doc/common/conf.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 generate documentation reproducibly
 TODO: make this use SOURCE_DATE_EPOCH instead which is set automatically by debhelper
 https://wiki.debian.org/ReproducibleBuilds/TimestampsProposal#Python
u0 better sphinx failure modes.patch #25160, 25161 | (download)

sage/src/sage_setup/docbuild/__init__.py | 24 20 + 4 - 0 !
sage/src/sage_setup/docbuild/sphinxbuild.py | 2 1 + 1 - 0 !
2 files changed, 21 insertions(+), 5 deletions(-)

 better failure modes for the docbuild
 - Make non-Exception BaseExceptions like SignalError fail the docbuild early.
 - Don't strip lines in the custom logger, because it messes with stack traces.
 - Slight refactoring of the build_many stuff to make it easier to play with.
u1 fix atrocious symlink logic.patch #22444 | (download)

sage/src/sage/repl/ipython_kernel/install.py | 10 9 + 1 - 0 !
1 file changed, 9 insertions(+), 1 deletion(-)

 fix atrocious logic in symlink()
 If the desired result is already in effect, do nothing. Otherwise, proceed
 with the previous behaviour, but handle permissions errors correctly.
 We don't actually need any part of this file in Debian, but fixing this (so
 that post-install tests don't fail) was easier than trying to figure out if
 removing the file would have other consequences elsewhere.
u1 looser doctest basename.patch #22445 | (download)

sage/src/sage/doctest/sources.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 make sage.doctest.sources.get_basename work in more situations
 This lets you specify SAGE_SRC like /path/to/test/dir/../../src/dir, which
 avoids post-install test failures in sage/doctest/test.py
u1 scripts dir.patch #22731 | (download)

sage/src/bin/sage | 12 6 + 6 - 0 !
sage/src/bin/sage-cachegrind | 2 1 + 1 - 0 !
sage/src/bin/sage-callgrind | 2 1 + 1 - 0 !
sage/src/bin/sage-env | 2 1 + 1 - 0 !
sage/src/bin/sage-massif | 2 1 + 1 - 0 !
sage/src/bin/sage-omega | 2 1 + 1 - 0 !
sage/src/bin/sage-valgrind | 2 1 + 1 - 0 !
sage/src/sage/doctest/control.py | 12 6 + 6 - 0 !
sage/src/sage/env.py | 1 1 + 0 - 0 !
sage/src/sage/interfaces/maxima.py | 4 2 + 2 - 0 !
10 files changed, 21 insertions(+), 20 deletions(-)

 define and use sage_scripts_dir in more places
 So distros can install them somewhere other than /usr/bin
u1 ipywidgets repr.patch #https://github.com/jupyter widgets/ipywidgets/pull/1031 | (download)

sage/src/sage/repl/ipython_kernel/widgets.py | 31 30 + 1 - 0 !
1 file changed, 30 insertions(+), 1 deletion(-)

 money-patch ipywidgets in the way that sage upstream expects
 Sage upstream patches ipywidgets, but this is still being discussed
 upstream (see Bug below). In the meantime, we can have Sage monkey-patch
 ipywidgets at runtime, to prevent other users of ipywidgets being affected.
u1 version cddlib 094h.patch #25344 | (download)

sage/src/sage/geometry/polyhedron/backend_cdd.py | 8 6 + 2 - 0 !
1 file changed, 6 insertions(+), 2 deletions(-)

 use cddlib version 094h
u1 workaround sympow malloc perturb.patch #https://salsa.debian.org/science team/sympow/merge_requests/1, reported to upstream by private email | (download)

sage/src/sage/lfunctions/sympow.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 work around sympow segfault due to malloc_perturb_
u1 fix trivial test cases.patch #25094, #25096, #25102, the interpreter bits do not seem necessary anymore | (download)

sage/src/sage/calculus/calculus.py | 2 1 + 1 - 0 !
sage/src/sage/interfaces/gap.py | 2 1 + 1 - 0 !
sage/src/sage/interfaces/tachyon.py | 3 2 + 1 - 0 !
sage/src/sage/modules/free_module_element.pyx | 4 2 + 2 - 0 !
sage/src/sage/repl/interpreter.py | 8 4 + 4 - 0 !
sage/src/sage/tests/books/judson-abstract-algebra/sylow-sage.py | 2 1 + 1 - 0 !
6 files changed, 11 insertions(+), 10 deletions(-)

 fix trivial test cases to work
 Includes cases of:
 - add more "..." wildcard patterns to the test
 - changing the value to an exactly-equivalent value. 
 These should probably be forwarded upstream.
 .
 Also includes cases of:
 - update an expected error message to some conceptually identical message
u2 pari stackwarn.patch #23263 | (download)

sage/src/sage/doctest/parsing.py | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 ignore warnings of pari increasing the stack size when parsing doctests
 Since we can't patch PARI to not produce the warnings and we don't want to
 patch tons of doctests to expect the warnings, we patch the doctest parser
 to ignore them.
u2 fix sympow cachedir.patch | (download)

sage/src/sage/lfunctions/sympow.py | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 set sympow_cachedir to be inside dot_sage
 Otherwise tests fail in sbuild because sympow can't create HOME/.sympow
u2 allow override sage local.patch | (download)

sage/build/make/install | 4 2 + 2 - 0 !
sage/configure.ac | 2 1 + 1 - 0 !
sage/sage | 2 2 + 0 - 0 !
sage/src/bin/sage-env | 2 1 + 1 - 0 !
sage/src/sage/env.py | 2 1 + 1 - 0 !
5 files changed, 7 insertions(+), 5 deletions(-)

 allow sage_local to be overridden from outside the makefiles
 This makes it easier for package managers to create binary distributions.
 However, keep SAGE_SPKG_INST relative to SAGE_ROOT rather than SAGE_LOCAL
 since that would be a more intrusive change.
d0 pari 2.9 revert 24531.patch | (download)

sage/src/sage/libs/pari/convert_gmp.pyx | 3 0 + 3 - 0 !
sage/src/sage/libs/ratpoints.pyx | 15 1 + 14 - 0 !
sage/src/sage/schemes/elliptic_curves/descent_two_isogeny.pyx | 179 84 + 95 - 0 !
sage/src/sage/schemes/elliptic_curves/ell_rational_field.py | 70 39 + 31 - 0 !
4 files changed, 124 insertions(+), 143 deletions(-)

 use pari instead of ratpoints


d0 pari 2.9 revert 23544.patch | (download)

sage/src/sage/libs/pari/tests.py | 6 3 + 3 - 0 !
sage/src/sage/modular/cusps_nf.py | 2 1 + 1 - 0 !
sage/src/sage/modular/local_comp/smoothchar.py | 4 2 + 2 - 0 !
sage/src/sage/modular/modsym/p1list_nf.py | 4 2 + 2 - 0 !
sage/src/sage/rings/number_field/number_field.py | 10 5 + 5 - 0 !
sage/src/sage/rings/number_field/number_field_ideal.py | 2 1 + 1 - 0 !
sage/src/sage/rings/number_field/number_field_rel.py | 4 2 + 2 - 0 !
sage/src/sage/rings/number_field/unit_group.py | 36 18 + 18 - 0 !
sage/src/sage/rings/padics/padic_capped_absolute_element.pyx | 2 1 + 1 - 0 !
sage/src/sage/rings/padics/padic_capped_relative_element.pyx | 2 1 + 1 - 0 !
sage/src/sage/rings/padics/padic_fixed_mod_element.pyx | 2 1 + 1 - 0 !
sage/src/sage/rings/qqbar.py | 4 2 + 2 - 0 !
sage/src/sage/schemes/elliptic_curves/ell_number_field.py | 4 2 + 2 - 0 !
sage/src/sage/schemes/projective/projective_morphism.py | 7 5 + 2 - 0 !
sage/src/sage/tests/books/judson-abstract-algebra/fields-sage.py | 10 4 + 6 - 0 !
15 files changed, 50 insertions(+), 49 deletions(-)

 fix doctests for pari upgrade


d0 arb.patch | (download)

sage/src/module_list.py | 4 2 + 2 - 0 !
sage/src/sage/libs/arb/acb.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/acb_calc.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/acb_elliptic.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/acb_hypgeom.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/acb_modular.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/acb_poly.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/arb.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/arf.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/bernoulli.pxd | 2 1 + 1 - 0 !
sage/src/sage/libs/arb/mag.pxd | 2 1 + 1 - 0 !
11 files changed, 12 insertions(+), 12 deletions(-)

 link with -lflint-arb instead of -larb
 The name of the arb library is libflint-arb in Debian.
d0 gsl cblas.patch | (download)

sage/src/module_list.py | 7 3 + 4 - 0 !
sage/src/sage/misc/cython.py | 7 3 + 4 - 0 !
2 files changed, 6 insertions(+), 8 deletions(-)

 hard-code gsl cblas paths and keep gslcblas in gsl_libs
 Debian does not provide a pkg-config file for libgslcblas,
 so just hard-code the paths here for Sage
 .
 Also, when gslcblas is removed from gsl_libs we currently get this error
 at the beginning of the doc build:
 ImportError: /usr/lib/x86_64-linux-gnu/libgsl.so.19: undefined symbol: cblas_ctrmv
 Does libgsl need to be linked against gslcblas?
d0 libgap sage.patch | (download)

sage/src/module_list.py | 14 9 + 5 - 0 !
sage/src/sage/libs/gap/test/Makefile | 10 6 + 4 - 0 !
sage/src/setup.py | 10 8 + 2 - 0 !
3 files changed, 23 insertions(+), 11 deletions(-)

 use debian libgap paths
 Debian installs libGAP headers to non-standard paths to avoid conflict with
 the main GAP headers. Moreover, many Sage modules use libGAP, so just add
 these paths to all modules instead of doing module-specific patches.
d0 maxima.patch | (download)

sage/src/bin/sage | 2 1 + 1 - 0 !
sage/src/doc/en/constructions/plotting.rst | 2 1 + 1 - 0 !
sage/src/sage/interfaces/expect.py | 2 1 + 1 - 0 !
sage/src/sage/interfaces/maxima.py | 4 2 + 2 - 0 !
sage/src/sage/interfaces/maxima_abstract.py | 11 4 + 7 - 0 !
sage/src/sage/interfaces/maxima_lib.py | 2 1 + 1 - 0 !
6 files changed, 10 insertions(+), 13 deletions(-)

 change to work with debians maxima-sage packages
d0 nauty.patch | (download)

sage/src/sage/graphs/digraph_generators.py | 2 1 + 1 - 0 !
sage/src/sage/graphs/graph_generators.py | 4 2 + 2 - 0 !
sage/src/sage/graphs/hypergraph_generators.py | 2 1 + 1 - 0 !
3 files changed, 4 insertions(+), 4 deletions(-)

---
d0 pari.patch | (download)

sage/src/sage/interfaces/gp.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

---
d0 rubiks.patch | (download)

sage/src/sage/interfaces/rubik.py | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 find rubiks binaries
d0 singular.patch | (download)

sage/src/sage/env.py | 2 1 + 1 - 0 !
sage/src/sage/interfaces/singular.py | 5 3 + 2 - 0 !
sage/src/sage/misc/compat.py | 2 1 + 1 - 0 !
sage/src/sage/misc/cython.py | 5 5 + 0 - 0 !
4 files changed, 10 insertions(+), 4 deletions(-)

 additional changes to work with the debian package of singular
 We search for a specific SOVERSION of libsingular-Singular, to allow us to
 runtime-Depend on libsingular4 and not libsingular4-dev.
d0 disable jsmol.patch | (download)

sage/src/sage/repl/display/jsmol_iframe.py | 13 13 + 0 - 0 !
sage/src/sage/repl/ipython_kernel/install.py | 18 0 + 18 - 0 !
2 files changed, 13 insertions(+), 18 deletions(-)

 disable installation of jsmol nbextension
d0 paths sharedata.patch | (download)

sage/src/sage/combinat/designs/latin_squares.py | 3 1 + 2 - 0 !
sage/src/sage/databases/cremona.py | 6 3 + 3 - 0 !
sage/src/sage/graphs/strongly_regular_db.pyx | 3 1 + 2 - 0 !
3 files changed, 5 insertions(+), 7 deletions(-)

 hard-code paths to system shared data
 This could be made generic and forwarded upstream. For example, add another
 SAGE_SHARE_DATA directory, which for upstream would be the same as SAGE_SHARE
 and for us would be /usr/share/sagemeth. However, this may not be worth the
 effort:
 - upstream already tried it before (as SAGE_DATA) and decide to ditch that
 - for upstream to accept it again, we'd also have to patch lots of things that
   are pointless for Debian, such as the scripts in build/pkgs
d0 paths.patch | (download)

sage/build/bin/sage-python23 | 4 2 + 2 - 0 !
sage/src/sage/interfaces/gap.py | 2 1 + 1 - 0 !
sage/src/sage/interfaces/jmoldata.py | 2 1 + 1 - 0 !
sage/src/sage/libs/lcalc/lcalc_sage.h | 2 1 + 1 - 0 !
sage/src/sage/misc/cython.py | 2 1 + 1 - 0 !
5 files changed, 6 insertions(+), 6 deletions(-)

 hard-code paths to external system run-time dependencies
d0 threejs offline paths.patch | (download)

sage/src/sage/repl/rich_output/backend_ipython.py | 18 6 + 12 - 0 !
sage/src/sage/repl/rich_output/backend_sagenb.py | 6 4 + 2 - 0 !
2 files changed, 10 insertions(+), 14 deletions(-)

---
d1 install paths.patch # many things in here could be split into an upstreamable patch | (download)

sage/configure.ac | 3 1 + 2 - 0 !
sage/sage | 1 1 + 0 - 0 !
sage/src/Makefile.in | 2 1 + 1 - 0 !
sage/src/module_list.py | 2 1 + 1 - 0 !
sage/src/sage/doctest/sources.py | 4 2 + 2 - 0 !
sage/src/sage/env.py | 8 4 + 4 - 0 !
sage/src/sage/interacts/debugger.py | 4 2 + 2 - 0 !
sage/src/sage/repl/ipython_kernel/install.py | 11 6 + 5 - 0 !
sage/src/sage_setup/clean.py | 2 1 + 1 - 0 !
sage/src/sage_setup/find.py | 9 4 + 5 - 0 !
sage/src/setup.py | 6 3 + 3 - 0 !
11 files changed, 26 insertions(+), 26 deletions(-)

 install to debian paths
 TODO: upstream hard-codes "site-packages" in a bunch of places; these should
 be fixed to use SAGE_LIB instead and forwarded upstream. Then this patch could
 be a lot smaller.
d1 sage cli.patch | (download)

sage/src/bin/sage | 389 3 + 386 - 0 !
sage/src/sage/tests/cmdline.py | 103 0 + 103 - 0 !
2 files changed, 3 insertions(+), 489 deletions(-)

 patch the sage startup script
 This patch removes options that do not work for us
 and removes a check for if we are in a sage source directory.
 It has only minor modifications from the sage-on-gentoo version.
d1 sage env.patch | (download)

sage/README.md | 2 1 + 1 - 0 !
sage/build/make/deps | 2 1 + 1 - 0 !
sage/build/make/install | 2 1 + 1 - 0 !
sage/src/bin/sage | 7 6 + 1 - 0 !
sage/src/bin/sage-env | 32 10 + 22 - 0 !
sage/src/doc/en/developer/sage_manuals.rst | 2 1 + 1 - 0 !
sage/src/doc/en/faq/faq-general.rst | 2 1 + 1 - 0 !
sage/src/doc/en/installation/source.rst | 2 1 + 1 - 0 !
sage/src/sage/env.py | 13 7 + 6 - 0 !
sage/src/sage_setup/docbuild/__init__.py | 2 1 + 1 - 0 !
10 files changed, 30 insertions(+), 36 deletions(-)

 patch sage-env and env.py
 Note that the patched sage-env is only used during the package build and not installed.
 Instead the file debian/adhoc/sage-env is installed.
 .
 The LD_LIBRARY_PATH can probably be forwarded upstream, either way is fine.
d1 fakeroot.patch | (download)

sage/configure.ac | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

 we are building with fakeroot which makes this check fail.
 dpkg-buildpackage uses `fakeroot debian/rules clean` so this is needed
d1 test optional.patch | (download)

sage/src/sage/doctest/control.py | 18 0 + 18 - 0 !
sage/src/sage/doctest/test.py | 8 0 + 8 - 0 !
2 files changed, 26 deletions(-)

 do not look for optional packages when running the testsuite
d1 multiarch python paths.patch | (download)

sage/src/sage/misc/sageinspect.py | 8 7 + 1 - 0 !
1 file changed, 7 insertions(+), 1 deletion(-)

 correctly handle debian's python multiarch extension module names
 We need to strip that part in order to return the correct ".pyx" filename.
 Otherwise a few post-install tests break.
d1 doc docs.patch | (download)

sage/src/sage/misc/copying.py | 2 1 + 1 - 0 !
sage/src/sage/misc/sagedoc.py | 4 2 + 2 - 0 !
2 files changed, 3 insertions(+), 3 deletions(-)

---
d1 disable post install tests.patch | (download)

sage/src/sage/all.py | 8 0 + 8 - 0 !
sage/src/sage/misc/sage_ostools.pyx | 2 0 + 2 - 0 !
2 files changed, 10 deletions(-)

 disable some post-install tests
 We don't need to test these pre-install either because they're already
 implicitly tested by other parts of the build process.
d1 remove sage python23.patch | (download)

sage/src/bin/sage | 4 2 + 2 - 0 !
sage/src/bin/sage-eval | 2 1 + 1 - 0 !
sage/src/bin/sage-fixdoctests | 2 1 + 1 - 0 !
sage/src/bin/sage-ipython | 2 1 + 1 - 0 !
sage/src/bin/sage-list-packages | 2 1 + 1 - 0 !
sage/src/bin/sage-preparse | 2 1 + 1 - 0 !
sage/src/bin/sage-run-cython | 2 1 + 1 - 0 !
sage/src/bin/sage-runtests | 2 1 + 1 - 0 !
sage/src/bin/sage-startuptime.py | 2 1 + 1 - 0 !
9 files changed, 10 insertions(+), 10 deletions(-)

 replace sage-python23 by python
 The command sage-python23 is intended to run sage's own python.
 In our case we only have the system python.
df revert minor feature dependent on python patch.patch | (download)

sage/src/sage/rings/integer.pyx | 10 0 + 10 - 0 !
1 file changed, 10 deletions(-)

 revert sage commit 5dbc699911095dd03f0141a7c1b7ba1c7056ceef
 This is dependent on a python patch that hasn't landed upstream or in Debian
 yet. It adds a minor feature used nowhere except the doctests, so just revert
 it because we know it will break.
df python_security.patch | (download)

sage/src/sage/doctest/control.py | 25 13 + 12 - 0 !
sage/src/sage/tests/cmdline.py | 33 17 + 16 - 0 !
2 files changed, 30 insertions(+), 28 deletions(-)

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