include/ForgettingMassCalculator.hpp | 2 1 + 1 - 0 !
include/SalmonUtils.hpp | 2 1 + 1 - 0 !
src/ProgramOptionsGenerator.cpp | 4 2 + 2 - 0 !
src/SalmonUtils.cpp | 2 1 + 1 - 0 !
4 files changed, 5 insertions(+), 5 deletions(-)

 new spelling typos :-)

src/CMakeLists.txt | 24 12 + 12 - 0 !
1 file changed, 12 insertions(+), 12 deletions(-)

 use debian packaged libraries and make sure these are linked dynamically

CMakeLists.txt | 6 1 + 5 - 0 !
1 file changed, 1 insertion(+), 5 deletions(-)

 use local copy of pufferfish source for now

src/Salmon.cpp | 7 0 + 7 - 0 !
1 file changed, 7 deletions(-)

 disable the newer version check

doc/source/conf.py | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 use sphinx theme that is packaged for debian