Package: samtools-legacy / 0.1.19+dfsg-6

Metadata

Package Version Patches format
samtools-legacy 0.1.19+dfsg-6 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix_example_makefile.patch | (download)

examples/Makefile | 10 2 + 8 - 0 !
1 file changed, 2 insertions(+), 8 deletions(-)

 disable samtools pileup commands in the example tests.
 samtools pileup has been dropped in version 0.1.17.
fix_segfault_with_small_ref.patch | (download)

bam_plcmd.c | 18 16 + 2 - 0 !
1 file changed, 16 insertions(+), 2 deletions(-)

 fix segfault if position is outside of the reference sequence length
fix_coverage_cap.patch | (download)

bam2depth.c | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

 increases the coverage cap from 8.000 to 1.000.000

hardening.patch | (download)

examples/Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 inject essential hardening options
gcc 11.patch | (download)

bam_tview_curses.c | 8 2 + 6 - 0 !
1 file changed, 2 insertions(+), 6 deletions(-)

 fix
  bam_tview_curses.c:66:2: error: format not a string literal and no format arguments [-Werror=format-security]