Package: seqan2 / 2.4.0+dfsg-8~bpo8+1

Metadata

Package Version Patches format
seqan2 2.4.0+dfsg-8~bpo8+1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
spelling | (download)

apps/ngs_roi/bam2roi.cpp | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 typo fix, interst->interest

skip seqan revision | (download)

util/cmake/SeqAnBuildSystem.cmake | 17 9 + 8 - 0 !
1 file changed, 9 insertions(+), 8 deletions(-)

 don't look for a git directory, as the debian packaging confuses
the build system

fix version_check test | (download)

tests/arg_parse/test_arg_parse_version_check.h | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fixes test to work with -dseqan_disable_version_check=yes

skip some apps on some archs | (download)

apps/razers/CMakeLists.txt | 10 10 + 0 - 0 !
apps/razers3/CMakeLists.txt | 15 15 + 0 - 0 !
apps/searchjoin/CMakeLists.txt | 5 5 + 0 - 0 !
apps/yara/CMakeLists.txt | 34 34 + 0 - 0 !
4 files changed, 64 insertions(+)

 skip some architectures + seqan app combinations
Could be a bug in gcc or seqan, but the memory requirements on mips{,el} to
compile three of the apps balloons beyond 14GiB, so skip them

If you update this patch (add/remove an architecture/app combo),
then update debian/README.Debian


tweak_readmes | (download)

apps/ngs_roi/README | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 update paths to their debian equivalents

install_fiona_illumina | (download)

apps/fiona/CMakeLists.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 install the illumina version of fiona as well

ctdVersion.patch | (download)

include/seqan/arg_parse/arg_parse_ctd_support.h | 2 1 + 1 - 0 !
tests/arg_parse/test_app.ctd | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 [patch] [internal] fix ctd output: add ctdversion tag in header.


fix_manpage_formatting.patch | (download)

include/seqan/arg_parse/tool_doc.h | 25 21 + 4 - 0 !
1 file changed, 21 insertions(+), 4 deletions(-)

 [patch] [internal] fixes man page output: escape special characters
 '.' or ''' at the beginning of a line.