1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
|
Author: Andreas Tille <tille@debian.org>
Last-Update: Thu, 19 Oct 2017 16:27:56 +0200
Description: Fix spelling
--- a/blixemApp/blxmain.cpp
+++ b/blixemApp/blxmain.cpp
@@ -65,7 +65,7 @@ gboolean blixem_debug_G = FALSE ;
\n\
<sequence_file> contains the reference sequence in FASTA format.\n\
<data_file> is a GFF v3 file containing alignments and other features.\n\
- If <sequence_file> is ommitted, <data_file> should contain the reference\n\
+ If <sequence_file> is omitted, <data_file> should contain the reference\n\
sequence in FASTA format, below a comment line that reads ##FASTA.\n\
\n\
Both <sequence_file> and <data_file> can be substituted by \"-\"\n\
@@ -202,7 +202,7 @@ gboolean blixem_debug_G = FALSE ;
#define HELP_TEXT "\n\
FEATURES\n\
- The prefered file format for <datafile> is GFF v3. (However, Blixem is still compatible with\n\
+ The preferred file format for <datafile> is GFF v3. (However, Blixem is still compatible with\n\
older file formats such as exblx and seqbl, as used by MSPcrunch).\n\
\n\
Blixem is mainly aimed at displaying alignments, but can also show other features such as\n\
--- a/doc/User_doc/belvu_usage.txt
+++ b/doc/User_doc/belvu_usage.txt
@@ -176,5 +176,5 @@
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
Copyright (c) 2011: Genome Research Ltd.
- Belvu is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+ Belvu is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
--- a/doc/User_doc/blixem_usage.txt
+++ b/doc/User_doc/blixem_usage.txt
@@ -4,7 +4,7 @@
<sequencefile> contains the reference sequence in FASTA format.
<datafile> is a GFF v3 file containing alignments and other features.
- If <sequencefile> is ommitted, <datafile> should contain the reference
+ If <sequencefile> is omitted, <datafile> should contain the reference
sequence in FASTA format, below a comment line that reads ##FASTA.
Both <sequencefile> and <datafile> can be substituted by "-"
@@ -108,7 +108,7 @@
FEATURES
- The prefered file format for <datafile> is GFF v3. (However, Blixem is still compatible with
+ The preferred file format for <datafile> is GFF v3. (However, Blixem is still compatible with
older file formats such as exblx and seqbl, as used by MSPcrunch).
Blixem is mainly aimed at displaying alignments, but can also show other features such as
@@ -205,4 +205,4 @@ MSPcrunch
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
Copyright (c) 2009-2011: Genome Research Ltd.
- Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+ Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
--- a/doc/User_doc/dotter_usage.txt
+++ b/doc/User_doc/dotter_usage.txt
@@ -88,5 +88,5 @@
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
Copyright (c) 2010-2011: Genome Research Ltd.
- Dotter is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+ Dotter is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
--- a/seqtoolsUtils/version.hpp
+++ b/seqtoolsUtils/version.hpp
@@ -120,7 +120,7 @@ PACKAGE_NAME " - " VERSION_STRING
/* Make a licence string */
#define UT_MAKE_LICENCE_STRING(TITLE) \
-TITLE" is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt"
+TITLE" is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt"
/* Define the authors of the SeqTools package. AUTHOR_LIST is a comma-separated list of all authors
--- a/test/scripts/automated/blixem/test1_results
+++ b/test/scripts/automated/blixem/test1_results
@@ -5,7 +5,7 @@
<sequencefile> contains the reference sequence in FASTA format.
<datafile> is a GFF v3 file containing alignments and other features.
- If <sequencefile> is ommitted, <datafile> should contain the reference
+ If <sequencefile> is omitted, <datafile> should contain the reference
sequence in FASTA format, below a comment line that reads ##FASTA.
Both <sequencefile> and <datafile> can be substituted by "-"
@@ -109,7 +109,7 @@
FEATURES
- The prefered file format for <datafile> is GFF v3. (However, Blixem is still compatible with
+ The preferred file format for <datafile> is GFF v3. (However, Blixem is still compatible with
older file formats such as exblx and seqbl, as used by MSPcrunch).
Blixem is mainly aimed at displaying alignments, but can also show other features such as
@@ -201,7 +201,7 @@ To make the datafile from blast output,
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
Copyright (c) 2009-2011: Genome Research Ltd.
- Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+ Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
Version 4.10-1-g6bff 17:38:25 Apr 4 2012
--- a/test/scripts/automated/blixem/test2_results
+++ b/test/scripts/automated/blixem/test2_results
@@ -5,7 +5,7 @@
<sequencefile> contains the reference sequence in FASTA format.
<datafile> is a GFF v3 file containing alignments and other features.
- If <sequencefile> is ommitted, <datafile> should contain the reference
+ If <sequencefile> is omitted, <datafile> should contain the reference
sequence in FASTA format, below a comment line that reads ##FASTA.
Both <sequencefile> and <datafile> can be substituted by "-"
@@ -117,7 +117,7 @@
See http://www.sanger.ac.uk/resources/software/seqtools/ for more info.
Copyright (c) 2009-2011: Genome Research Ltd.
- Blixem is distributed under the GNU Public License; see http://www.gnu.org/copyleft/gpl.txt
+ Blixem is distributed under the GNU General Public License; see http://www.gnu.org/copyleft/gpl.txt
Version 4.10-1-g6bff 17:38:25 Apr 4 2012
--- a/ChangeLog
+++ b/ChangeLog
@@ -14137,7 +14137,7 @@
5 files changed, 83 insertions(+), 20 deletions(-)
2010-04-13 gb10 <gb10>
- New blixem: make sure we don't find a non-monospace font in our prefered list of font families
+ New blixem: make sure we don't find a non-monospace font in our preferred list of font families
detailview.c | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
|
