Package: seqtools / 4.44.1+dfsg-3

Metadata

Package Version Patches format
seqtools 4.44.1+dfsg-3 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
dynamic lib.patch | (download)

belvuApp/Makefile.am | 4 2 + 2 - 0 !
blixemApp/Makefile.am | 6 3 + 3 - 0 !
dotterApp/Makefile.am | 4 2 + 2 - 0 !
gbtools/configure.ac | 6 4 + 2 - 0 !
4 files changed, 11 insertions(+), 9 deletions(-)

 create dynamic library


prevent_usage_of_blatsrc.patch | (download)

gbtools/configure.ac | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 dirty trick to always assume have_blatsrc_deps=0 and thus never
 use blatSrc


use_debian_packaged_jsoncpp.patch | (download)

configure.ac | 2 1 + 1 - 0 !
doc/Design_notes/Makefile | 2 1 + 1 - 0 !
doc/Design_notes/modules/Makefile | 2 1 + 1 - 0 !
gbtools/Makefile.am | 6 1 + 5 - 0 !
gbtools/configure.ac | 2 0 + 2 - 0 !
gbtools/src/Makefile.am | 6 0 + 6 - 0 !
gbtools/src/Makefile.am.common | 2 1 + 1 - 0 !
gbtools/src/include/Makefile.am | 204 0 + 204 - 0 !
8 files changed, 5 insertions(+), 221 deletions(-)

 use debian packaged jsoncpp as well as get completely rid
 of blatSrc in automake configuration


fix_missing_includes.patch | (download)

blixemApp/blxwindow.cpp | 1 1 + 0 - 0 !
gbtools/src/gbtoolsTrackhub/gbtoolsTrackhub.cpp | 3 2 + 1 - 0 !
2 files changed, 3 insertions(+), 1 deletion(-)

 fix include statement


spelling.patch | (download)

ChangeLog | 2 1 + 1 - 0 !
blixemApp/blxmain.cpp | 4 2 + 2 - 0 !
doc/User_doc/belvu_usage.txt | 2 1 + 1 - 0 !
doc/User_doc/blixem_usage.txt | 6 3 + 3 - 0 !
doc/User_doc/dotter_usage.txt | 2 1 + 1 - 0 !
seqtoolsUtils/version.hpp | 2 1 + 1 - 0 !
test/scripts/automated/blixem/test1_results | 6 3 + 3 - 0 !
test/scripts/automated/blixem/test2_results | 4 2 + 2 - 0 !
8 files changed, 14 insertions(+), 14 deletions(-)

 fix spelling


ksh2sh.patch | (download)

test/scripts/automated/belvu/test1 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test10 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test11 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test12 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test13 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test14 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test15 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test16 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test17 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test18 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test19 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test2 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test20 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test21 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test22 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test23 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test24 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test25 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test26 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test27 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test28 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test29 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test3 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test30 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test31 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test32 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test33 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test34 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test35 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test36 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test37 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test38 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test39 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test4 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test40 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test41 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test42 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test43 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test44 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test45 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test46 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test47 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test48 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test49 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test5 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test50 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test51 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test6 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test7 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test8 | 4 2 + 2 - 0 !
test/scripts/automated/belvu/test9 | 4 2 + 2 - 0 !
test/scripts/automated/blixem/test1 | 4 2 + 2 - 0 !
test/scripts/automated/blixem/test2 | 4 2 + 2 - 0 !
test/scripts/automated/dotter/test1 | 4 2 + 2 - 0 !
test/scripts/automated/dotter/test2 | 4 2 + 2 - 0 !
test/scripts/automated/dotter/test3 | 6 3 + 3 - 0 !
test/scripts/manual/belvu/test1 | 2 1 + 1 - 0 !
test/scripts/manual/belvu/test2 | 2 1 + 1 - 0 !
test/scripts/manual/belvu/test3 | 2 1 + 1 - 0 !
test/scripts/manual/belvu/test4 | 2 1 + 1 - 0 !
test/scripts/manual/belvu/test5 | 2 1 + 1 - 0 !
test/scripts/manual/blixem/test1 | 2 1 + 1 - 0 !
test/scripts/manual/blixem/test2 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test1 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test2 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test3 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test4 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test5 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test6 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test7 | 2 1 + 1 - 0 !
test/scripts/manual/dotter/test8 | 2 1 + 1 - 0 !
71 files changed, 128 insertions(+), 128 deletions(-)

 konvert test scripts from ksh to posix sh