## Package: snakemake / 5.4.0-1

Package Version Patches format
snakemake 5.4.0-1 3.0 (quilt)

### Patch series

view the series file
Patch File delta Description

docs/conf.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 use the inbuild sphinx.ext.napoleon

Removes the dependency on sphinxcontrib.napoleon, which is now part of
sphinx proper, as sphinx.ext.napoleon.



docs/conf.py | 3 3 + 0 - 0 !
snakemake/gui.html | 6 3 + 3 - 0 !
2 files changed, 6 insertions(+), 3 deletions(-)

 use local javascript/css as appropriate j

Use debian's mathjax package



tests/test_symlink_time_handling/Snakefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 compat fix



bin/snakemake | 6 6 + 0 - 0 !
1 file changed, 6 insertions(+)

 version 3.9.1 is lacking snakemake executable - using the
binary that results from build process as quilt patch at the former location



docs/conf.py | 3 1 + 2 - 0 !
1 file changed, 1 insertion(+), 2 deletions(-)

 remove sphinxext which spoils doc generation


tests/test_remote_gs/Snakefile | 30 17 + 13 - 0 !
1 file changed, 17 insertions(+), 13 deletions(-)

 skip tests with that depend on google-cloud-sdk if not installed


docs/index.rst | 14 7 + 7 - 0 !
docs/project_info/citations.rst | 2 1 + 1 - 0 !
snakemake/gui.html | 2 1 + 1 - 0 !
3 files changed, 9 insertions(+), 9 deletions(-)

 avoid privacy breach
Remark: The replacement of the icons might lead to kind of outdated
information in the local copy of the docs.  The tradeoff enhanced privacy
is probably worth it since most probably will read up to date docs
online anyway.
.
This patch does not solve all issues.  The remaining ones are discussed