Package: snakemake / 5.4.0-1

Metadata

Package Version Patches format
snakemake 5.4.0-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
0001 Use the inbuild sphinx.ext.napoleon.patch | (download)

docs/conf.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 use the inbuild sphinx.ext.napoleon

Removes the dependency on sphinxcontrib.napoleon, which is now part of
sphinx proper, as sphinx.ext.napoleon.

0003 Use debian s mathjax package.patch | (download)

docs/conf.py | 3 3 + 0 - 0 !
snakemake/gui.html | 6 3 + 3 - 0 !
2 files changed, 6 insertions(+), 3 deletions(-)

 use local javascript/css as appropriate j

Use debian's mathjax package

0003 Compat fix.patch | (download)

tests/test_symlink_time_handling/Snakefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 compat fix


0006 restore bin.patch | (download)

bin/snakemake | 6 6 + 0 - 0 !
1 file changed, 6 insertions(+)

 version 3.9.1 is lacking snakemake executable - using the
 binary that results from build process as quilt patch at the former location


0008 remove_sphinx.ext.patch | (download)

docs/conf.py | 3 1 + 2 - 0 !
1 file changed, 1 insertion(+), 2 deletions(-)

 remove sphinxext which spoils doc generation
0009 skip test without google cloud sdk.patch | (download)

tests/test_remote_gs/Snakefile | 30 17 + 13 - 0 !
1 file changed, 17 insertions(+), 13 deletions(-)

 skip tests with that depend on google-cloud-sdk if not installed
0011 fix privacy breach.patch | (download)

docs/index.rst | 14 7 + 7 - 0 !
docs/project_info/citations.rst | 2 1 + 1 - 0 !
snakemake/gui.html | 2 1 + 1 - 0 !
3 files changed, 9 insertions(+), 9 deletions(-)

 avoid privacy breach
 Remark: The replacement of the icons might lead to kind of outdated
 information in the local copy of the docs.  The tradeoff enhanced privacy
 is probably worth it since most probably will read up to date docs
 online anyway.
 .
 This patch does not solve all issues.  The remaining ones are discussed
 in debian/README.source.