SNAPLib/Compat.cpp | 2 1 + 1 - 0 !
SNAPLib/Compat.h | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 uses more liberal cpp defines to add compatibility to kfreebsd &
non-x86 systems

Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 drop sse flag, not needed for amd64 and x32 and limits portability
according to Aaron M. Ucko <ucko@debian.org>

SNAPLib/AlignerOptions.cpp | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 typo fix

SNAPLib/AlignerContext.cpp | 4 2 + 2 - 0 !
SNAPLib/AlignerOptions.cpp | 6 3 + 3 - 0 !
SNAPLib/CommandProcessor.cpp | 6 3 + 3 - 0 !
SNAPLib/GenomeIndex.cpp | 2 1 + 1 - 0 !
4 files changed, 9 insertions(+), 9 deletions(-)

 change the name of program in docs

Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 propagate hardening options

SNAPLib/Compat.cpp | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

 add missing return that causes segfault