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From: Michael R. Crusoe <michael.crusoe@gmail.com>
Subject: Spelling fixes
--- a/assembler/manual.html
+++ b/assembler/manual.html
@@ -753,7 +753,7 @@ For each file you should provide its ful
Make sure that files with right reads are given in the same order as corresponding files with left reads.
<p>
- For example, if you have one paired-end library splitted into two pairs of files:
+ For example, if you have one paired-end library split into two pairs of files:
<pre class="code">
<code>
lib_pe1_left_1.fastq
@@ -982,7 +982,7 @@ and PacBio CCS and CLR reads:
</pre>
<p>
- If a single-read library is splitted into several files:
+ If a single-read library is split into several files:
<pre class="code">
<code>
@@ -1131,7 +1131,7 @@ Then, <code>contigs.paths</code> will co
</pre>
<p>
-Since the current version of Bandage does not accept paths with gaps, paths corresponding contigs/scaffolds jumping over a gap in the assembly graph are splitted by semicolon at the gap positions. For example, the following record
+Since the current version of Bandage does not accept paths with gaps, paths corresponding contigs/scaffolds jumping over a gap in the assembly graph are split by semicolon at the gap positions. For example, the following record
<pre>
<code>
NODE_3_length_237403_cov_243.207
--- a/assembler/src/common/assembly_graph/stats/picture_dump.hpp
+++ b/assembler/src/common/assembly_graph/stats/picture_dump.hpp
@@ -123,7 +123,7 @@ class GenomeMappingStat: public Abstract
INFO("Genome mapping results:");
INFO("Covered k+1-mers:" << covered_kp1mers << " of " << (genome_.size() - k_) << " which is "
<< (100.0 * (double) covered_kp1mers / (double) (genome_.size() - k_)) << "%");
- INFO("Covered k+1-mers form " << break_number + 1 << " contigious parts");
+ INFO("Covered k+1-mers form " << break_number + 1 << " contiguous parts");
INFO("Continuity failtures " << fail);
}
};
--- a/assembler/src/common/modules/alignment/pacbio/pac_index.hpp
+++ b/assembler/src/common/modules/alignment/pacbio/pac_index.hpp
@@ -376,7 +376,7 @@ public:
auto next_iter = iter + 1;
if (next_iter == cur_cluster.end() || !IsConsistent(**iter, **next_iter)) {
if (next_iter != cur_cluster.end()) {
- DEBUG("clusters splitted:");
+ DEBUG("clusters split:");
DEBUG("on "<< (*iter)->str(g_));
DEBUG("and " << (*next_iter)->str(g_));
}
--- a/assembler/src/projects/hammer/hamcluster.cpp
+++ b/assembler/src/projects/hammer/hamcluster.cpp
@@ -173,7 +173,7 @@ void KMerHamClusterer::cluster(const std
size_t big_blocks2 = 0;
{
- INFO("Spliting sub-kmers, pass 2.");
+ INFO("Splitting sub-kmers, pass 2.");
SubKMerSplitter Splitter(bfname, kfname);
size_t nblocks = 0;
std::pair<size_t, size_t> stat =
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