Package: spades / 3.13.1+dfsg-2

spelling Patch series | download
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From: Michael R. Crusoe <michael.crusoe@gmail.com>
Subject: Spelling fixes
--- a/assembler/manual.html
+++ b/assembler/manual.html
@@ -753,7 +753,7 @@ For each file you should provide its ful
 Make sure that files with right reads are given in the same order as corresponding files with left reads.
 
 <p>
-    For example, if you have one paired-end library splitted into two pairs of files:
+    For example, if you have one paired-end library split into two pairs of files:
 <pre class="code">
 <code>
     lib_pe1_left_1.fastq
@@ -982,7 +982,7 @@ and PacBio CCS and CLR reads:
 </pre>
 
 <p>
-    If a single-read library is splitted into several files:
+    If a single-read library is split into several files:
 
 <pre class="code">
 <code>
@@ -1131,7 +1131,7 @@ Then, <code>contigs.paths</code> will co
 </pre>
 
 <p>
-Since the current version of Bandage does not accept paths with gaps, paths corresponding contigs/scaffolds jumping over a gap in the assembly graph are splitted by semicolon at the gap positions. For example, the following record
+Since the current version of Bandage does not accept paths with gaps, paths corresponding contigs/scaffolds jumping over a gap in the assembly graph are split by semicolon at the gap positions. For example, the following record
 <pre>
     <code>
     NODE_3_length_237403_cov_243.207
--- a/assembler/src/common/assembly_graph/stats/picture_dump.hpp
+++ b/assembler/src/common/assembly_graph/stats/picture_dump.hpp
@@ -123,7 +123,7 @@ class GenomeMappingStat: public Abstract
         INFO("Genome mapping results:");
         INFO("Covered k+1-mers:" << covered_kp1mers << " of " << (genome_.size() - k_) << " which is "
              << (100.0 * (double) covered_kp1mers / (double) (genome_.size() - k_)) << "%");
-        INFO("Covered k+1-mers form " << break_number + 1 << " contigious parts");
+        INFO("Covered k+1-mers form " << break_number + 1 << " contiguous parts");
         INFO("Continuity failtures " << fail);
     }
 };
--- a/assembler/src/common/modules/alignment/pacbio/pac_index.hpp
+++ b/assembler/src/common/modules/alignment/pacbio/pac_index.hpp
@@ -376,7 +376,7 @@ public:
             auto next_iter = iter + 1;
             if (next_iter == cur_cluster.end() || !IsConsistent(**iter, **next_iter)) {
                 if (next_iter != cur_cluster.end()) {
-                    DEBUG("clusters splitted:");
+                    DEBUG("clusters split:");
                     DEBUG("on "<< (*iter)->str(g_));
                     DEBUG("and " << (*next_iter)->str(g_));
                 }
--- a/assembler/src/projects/hammer/hamcluster.cpp
+++ b/assembler/src/projects/hammer/hamcluster.cpp
@@ -173,7 +173,7 @@ void KMerHamClusterer::cluster(const std
 
   size_t big_blocks2 = 0;
   {
-    INFO("Spliting sub-kmers, pass 2.");
+    INFO("Splitting sub-kmers, pass 2.");
     SubKMerSplitter Splitter(bfname, kfname);
     size_t nblocks = 0;
     std::pair<size_t, size_t> stat =