Package: sprai / 0.9.9.23+dfsg-2

example-specs.patch Patch series | download
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Description: Configure example/test run
 Use the provided example data and disable running wgs-assembler
 (which is discontinued upstream anyway).
Author: Afif Elghraoui <afif@debian.org>
Forwarded: no
Last-Update: 2017-01-19
--- sprai.orig/ec.spec
+++ sprai/ec.spec
@@ -1,6 +1,6 @@
 #### common ####
 # input_for_database: filtered subreads in fasta or fastq format
-input_for_database all.fq
+input_for_database pacbio.filtered_subreads.fasta
 
 # min_len_for_query: the subreads longer than or equal to this value will be corrected
 min_len_for_query 500
@@ -11,9 +11,9 @@
 estimated_depth 100
 
 # ca_path: where Celera Assembler exist in
-# If you don't have it and only want to run error-correction,
-# don't set this variable (comment it out)
-ca_path /home/imai/wgs/Linux-amd64/bin/
+# If have it and want to run a full assembly with it,
+# set this variable
+# ca_path /home/imai/wgs/Linux-amd64/bin/
 
 # the number of processes used by all vs. all alignment
 # = 'partition' (in single node mode)