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Author: Andreas Tille <tille@debian.org>
Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
Description: ngs-sdk header files are in /usr/include
--- a/setup/konfigure.perl
+++ b/setup/konfigure.perl
@@ -493,6 +493,7 @@ if ( $PKG{OPT} ) {
}
}
+$OPT{'debug'} = 1;
my %DEPEND_OPTIONS;
foreach my $href (DEPENDS()) {
$_ = $href->{name};
@@ -1001,7 +1002,7 @@ EndText
if ($PKG{LNG} eq 'JAVA') {
L($F,
- "INCPATHS = \$(SRCDIR):\$(SRCDIR)/itf:\$(TOP)/gov/nih/nlm/ncbi/ngs")
+ "INCPATHS = \$(SRCDIR):/usr/include/ngs/itf:/usr/include/ngs")
}
print $F <<EndText;
@@ -1379,7 +1380,9 @@ sub find_in_dir {
print "\tlibraries... " unless ($AUTORUN);
if ($lib) {
my $builddir = File::Spec->catdir($dir, $OS, $TOOLS, $ARCH, $BUILD);
- my $libdir = File::Spec->catdir($builddir, 'lib');
+ my $buildarch = `dpkg-architecture -qDEB_BUILD_MULTIARCH`;
+ chomp $buildarch;
+ my $libdir = File::Spec->catdir($dir, 'lib', $buildarch);
my $ilibdir = File::Spec->catdir($builddir, 'ilib');
my $f = File::Spec->catdir($libdir, $lib);
print "\n\t\tchecking $f\n\t" if ($OPT{'debug'});
--- a/setup/package.prl
+++ b/setup/package.prl
@@ -8,7 +8,7 @@ sub PKG { my @OPT = qw ( qmake );
( LNG => 'C',
OUT => 'ncbi-outdir',
LOCOUT=> '../../OUTDIR',
- PATH => '/usr/local/ncbi/sra-tools',
+ PATH => '/usr/lib/ncbi/sra-tools',
UPATH => '$HOME/ncbi/sra-tools',
OPT => \@OPT,
) }
@@ -22,7 +22,7 @@ sub REQ { (
option => 'with-ngs-sdk-prefix',
origin => 'I',
type => 'L',
- srcpath => '../ngs/ngs-sdk',
+ srcpath => '/usr/include',
pkgpath => '/usr/local/ngs/ngs-sdk',
usrpath => '$HOME/ngs/ngs-sdk',
bldpath => '$HOME/ncbi-outdir/ngs-sdk',
|
