scripts/stacks-hist2d-loci-samples-coverage | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

---

Makefile.am | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix script exe_paths
 denovo_map.pl and other stacks scripts hard-code the binary paths to the
 installation directory. However, we move these binaries to /usr/lib/stacks/bin,
 which breaks these scripts. This hard-codes the binary path to the correct
 location.

Makefile.am | 4 2 + 2 - 0 !
configure.ac | 4 2 + 2 - 0 !
2 files changed, 4 insertions(+), 4 deletions(-)

 use debian packaged version of htslib

scripts/count_fixed_catalog_snps.py | 28 14 + 14 - 0 !
scripts/integrate_alignments.py | 22 11 + 11 - 0 !
2 files changed, 25 insertions(+), 25 deletions(-)

 result of 2to3 port to python3