Package: subread / 2.0.1+dfsg-1

Metadata

Package Version Patches format
subread 2.0.1+dfsg-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
typo.patch | (download)

src/readSummary.c | 6 3 + 3 - 0 !
src/sambam-file.c | 2 1 + 1 - 0 !
2 files changed, 4 insertions(+), 4 deletions(-)

 fix typos
fix_ftbfs_kfreebsd.patch | (download)

src/HelperFunctions.c | 4 4 + 0 - 0 !
1 file changed, 4 insertions(+)

 fix ftbfs on kfreebsd
arch_specific_flags.patch | (download)

src/Makefile.Linux | 6 3 + 3 - 0 !
src/longread-one/Makefile | 6 3 + 3 - 0 !
2 files changed, 6 insertions(+), 6 deletions(-)

 inject architecture specific flags:
 - For amd64 and i386 add -mtune=generic and -msse3,
 - use -fsigned-char for all architectures and place it in the very beginning
   of CFLAGS, otherwise test fail on architecrures with unsigned char
   signedness
 - Change -O9 to -O3 because -O levels higher than 3 have no effect
 - Append CFLAGS and LDFLAGS instead of hardcoding the values, this way the
   hardening flags are set correctly
2to3.patch | (download)

test/subread-align/readname_cigar_match.py | 6 3 + 3 - 0 !
test/subread-align/readname_ora_match.py | 8 4 + 4 - 0 !
test/subread-align/subread-align-test.sh | 2 1 + 1 - 0 !
3 files changed, 8 insertions(+), 8 deletions(-)

 use 2to3 to port to python3
Bug-Debian: https://bugs.debian.org/938576
gcc10.patch | (download)

src/gene-algorithms.h | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix package to build with gcc-10
Bug-Debian: https://bugs.debian.org/957846