src/toil/test/jobStores/jobStoreTest.py | 2 1 + 1 - 0 !
src/toil/test/src/resourceTest.py | 2 0 + 2 - 0 !
src/toil/test/utils/toilKillTest.py | 1 1 + 0 - 0 !
3 files changed, 2 insertions(+), 3 deletions(-)

 make tests more independent

docs/conf.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 link to the offline python docs.

src/toil/version.py | 14 14 + 0 - 0 !
1 file changed, 14 insertions(+)

 fixing version.py that is variable and required

Bug-Debian: https://bugs.debian.org/851365

requirements-cwl.txt | 2 0 + 2 - 0 !
1 file changed, 2 deletions(-)

 skip galaxy-lib, not yet packaged for debian

docs/gettingStarted/quickStart.rst | 85 33 + 52 - 0 !
docs/index.rst | 1 0 + 1 - 0 !
2 files changed, 33 insertions(+), 53 deletions(-)

 update docs to reflect a local install

requirements.txt | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

 skip addict

src/toil/jobStores/fileJobStore.py | 17 10 + 7 - 0 !
1 file changed, 10 insertions(+), 7 deletions(-)

 os.link does not work with debci based setup and hence default to
 atomic copy

requirements-cwl.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 soften versioned dependency from cwltool

requirements.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 do not force any specific docker version,
 just take the Debian packaged one

requirements.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 remove max version pin for 'requests'

docs/running/hpcEnvironments.rst | 2 1 + 1 - 0 !
src/toil/batchSystems/slurm.py | 4 2 + 2 - 0 !
src/toil/common.py | 2 1 + 1 - 0 !
src/toil/lib/dockstore.py | 6 3 + 3 - 0 !
src/toil/lib/io.py | 2 1 + 1 - 0 !
src/toil/lib/plugins.py | 2 1 + 1 - 0 !
src/toil/provisioners/clusterScaler.py | 6 3 + 3 - 0 !
7 files changed, 12 insertions(+), 12 deletions(-)

 fix typos