Patch |
File delta |
Description |
use_debian_packaged_sprng.patch | (download) |
configure.ac |
2 1 + 1 - 0 !
src/Makefile.am |
16 8 + 8 - 0 !
src/util.c |
4 2 + 2 - 0 !
3 files changed, 11 insertions(+), 11 deletions(-) |
use debian packaged libsprng
|
tests need bash.patch | (download) |
tests/build-puzzle |
2 1 + 1 - 0 !
tests/build-remark |
2 1 + 1 - 0 !
tests/cons-pure-prot.test |
2 1 + 1 - 0 !
tests/generate-scripts.sh |
2 1 + 1 - 0 !
tests/lm-pure-prot.test |
2 1 + 1 - 0 !
tests/qp-clock.test |
2 1 + 1 - 0 !
tests/qp-hky-clock-nucl.test |
2 1 + 1 - 0 !
tests/qp-hky-rhet-clock-nucl.test |
2 1 + 1 - 0 !
tests/qp-hky-rhet-nucl.test |
2 1 + 1 - 0 !
tests/qp-jtt-prot.test |
2 1 + 1 - 0 !
tests/qp-jtt-rhet-clock-prot.test |
2 1 + 1 - 0 !
tests/qp-jtt-rhet-prot.test |
2 1 + 1 - 0 !
tests/qp-mtrev-prot.test |
2 1 + 1 - 0 !
tests/qp-pure-bin.test |
2 1 + 1 - 0 !
tests/qp-pure-nucl.test |
2 1 + 1 - 0 !
tests/qp-pure-prot.test |
2 1 + 1 - 0 !
tests/qp-tn-nucl.test |
2 1 + 1 - 0 !
tests/qp-vt-prot.test |
2 1 + 1 - 0 !
tests/qp-wag-prot.test |
2 1 + 1 - 0 !
tests/template-test |
2 1 + 1 - 0 !
tests/ut-pure-prot.test |
2 1 + 1 - 0 !
21 files changed, 21 insertions(+), 21 deletions(-) |
tests are using bash syntax so declare this on top
|
spelling.patch | (download) |
src/ml2.c |
2 1 + 1 - 0 !
src/puzzle1.c |
4 2 + 2 - 0 !
src/puzzle2.c |
2 1 + 1 - 0 !
src/treesort.c |
6 3 + 3 - 0 !
4 files changed, 7 insertions(+), 7 deletions(-) |
fix some spelling issues
|
fix mpi3 build.patch | (download) |
src/ppuzzle.c |
3 3 + 0 - 0 !
1 file changed, 3 insertions(+) |
replace obsolete mpi-2.0 api with their mpi-3.0 equivalents
Bug-Debian: https://bugs.debian.org/951984
|
update_test_results.patch | (download) |
tests/check-cons-pure-prot |
91 59 + 32 - 0 !
tests/check-lm-pure-prot |
188 129 + 59 - 0 !
tests/check-qp-clock |
188 108 + 80 - 0 !
tests/check-qp-hky-clock-nucl |
188 108 + 80 - 0 !
tests/check-qp-hky-rhet-clock-nucl |
376 201 + 175 - 0 !
tests/check-qp-hky-rhet-nucl |
311 168 + 143 - 0 !
tests/check-qp-jtt-prot |
175 101 + 74 - 0 !
tests/check-qp-jtt-rhet-clock-prot |
271 147 + 124 - 0 !
tests/check-qp-jtt-rhet-prot |
221 122 + 99 - 0 !
tests/check-qp-mtrev-prot |
127 77 + 50 - 0 !
tests/check-qp-pure-bin |
83 54 + 29 - 0 !
tests/check-qp-pure-nucl |
182 105 + 77 - 0 !
tests/check-qp-pure-prot |
123 75 + 48 - 0 !
tests/check-qp-tn-nucl |
279 154 + 125 - 0 !
tests/check-qp-vt-prot |
167 97 + 70 - 0 !
tests/check-qp-wag-prot |
163 95 + 68 - 0 !
tests/check-ut-pure-prot |
89 58 + 31 - 0 !
17 files changed, 1858 insertions(+), 1364 deletions(-) |
test results to compare with are just wrong as discussed
with upstream
See https://lists.debian.org/debian-med/2020/05/msg00118.html
|
reproducible build.patch | (download) |
src/puzzle1.c |
58 33 + 25 - 0 !
1 file changed, 33 insertions(+), 25 deletions(-) |
make the build reproducible
|
reduce_decimals_for_testing.patch | (download) |
tests/check-cons-pure-prot |
54 27 + 27 - 0 !
tests/check-lm-pure-prot |
20 10 + 10 - 0 !
tests/check-qp-clock |
158 79 + 79 - 0 !
tests/check-qp-hky-clock-nucl |
158 79 + 79 - 0 !
tests/check-qp-hky-rhet-clock-nucl |
164 82 + 82 - 0 !
tests/check-qp-hky-rhet-nucl |
132 66 + 66 - 0 !
tests/check-qp-jtt-prot |
54 27 + 27 - 0 !
tests/check-qp-jtt-rhet-clock-prot |
92 46 + 46 - 0 !
tests/check-qp-jtt-rhet-prot |
62 31 + 31 - 0 !
tests/check-qp-mtrev-prot |
60 30 + 30 - 0 !
tests/check-qp-pure-bin |
36 18 + 18 - 0 !
tests/check-qp-pure-nucl |
124 62 + 62 - 0 !
tests/check-qp-pure-prot |
54 27 + 27 - 0 !
tests/check-qp-tn-nucl |
124 62 + 62 - 0 !
tests/check-qp-vt-prot |
54 27 + 27 - 0 !
tests/check-qp-wag-prot |
54 27 + 27 - 0 !
tests/check-ut-pure-prot |
108 54 + 54 - 0 !
tests/cons-pure-prot.test |
2 2 + 0 - 0 !
tests/lm-pure-prot.test |
2 2 + 0 - 0 !
tests/qp-clock.test |
2 2 + 0 - 0 !
tests/qp-hky-clock-nucl.test |
2 2 + 0 - 0 !
tests/qp-hky-rhet-clock-nucl.test |
2 2 + 0 - 0 !
tests/qp-hky-rhet-nucl.test |
2 2 + 0 - 0 !
tests/qp-jtt-prot.test |
2 2 + 0 - 0 !
tests/qp-jtt-rhet-clock-prot.test |
2 2 + 0 - 0 !
tests/qp-jtt-rhet-prot.test |
2 2 + 0 - 0 !
tests/qp-mtrev-prot.test |
2 2 + 0 - 0 !
tests/qp-pure-bin.test |
2 2 + 0 - 0 !
tests/qp-pure-nucl.test |
2 2 + 0 - 0 !
tests/qp-pure-prot.test |
2 2 + 0 - 0 !
tests/qp-tn-nucl.test |
2 2 + 0 - 0 !
tests/qp-vt-prot.test |
2 2 + 0 - 0 !
tests/qp-wag-prot.test |
2 2 + 0 - 0 !
tests/template-test |
2 2 + 0 - 0 !
tests/ut-pure-prot.test |
2 2 + 0 - 0 !
35 files changed, 790 insertions(+), 754 deletions(-) |
reduce decimals for testing
Tests often fail because the last few decimals of the output
depend on the compiler. This patch circumvents that.
|
add failsafe for ut prottest.patch | (download) |
tests/ut-pure-prot.test |
2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-) |
add failsafe for ut-prottest
|