EukHighConfidenceFilter.in | 2 1 + 1 - 0 !
Makefile.am | 20 6 + 14 - 0 !
tRNAscan-SE.conf.src | 2 1 + 1 - 0 !
tRNAscan-SE.src | 2 1 + 1 - 0 !
4 files changed, 9 insertions(+), 17 deletions(-)

 use pkgdatadir and destdir in install-data-hook
 * omitting DESTDIR causes build problems
 * pkgdatadir is more appropriate than libdir for these file types.
 * Paths are all off because of using the Perl module subdirectory (tRNAscan-SE)
   as the base data directory to search from

Makefile.am | 7 4 + 3 - 0 !
tRNAscan-SE.src | 2 1 + 1 - 0 !
2 files changed, 5 insertions(+), 4 deletions(-)

 install default config file into /etc instead of /usr/bin

Makefile.am | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 check existence of files before calling chmod on them to fix arch indep builds

configure.ac | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 append cflags in configure.ac instead of overriding it
 This is needed to propagate Debian standard build flags