src/ugene_globals.pri | 9 9 + 0 - 0 !
1 file changed, 9 insertions(+)

 add qmake flags to add hardening
 Also remove parameters for win32 and macx because they seem to 
 irritate the build system.  Merged into this patch, because they 
 overlap. 
Last-Updated: 2015-12-10

ugene.pro | 2 0 + 2 - 0 !
1 file changed, 2 deletions(-)

 do not build phylip plugin which is removed since
 the code copy of the old version has no free license
 Also omitting psipred for the same reason

src/corelibs/U2Core/src/dbi/U2SQLiteTripleStore.cpp | 2 1 + 1 - 0 !
src/corelibs/U2Core/src/dbi/U2SqlHelpers.cpp | 2 1 + 1 - 0 !
src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobInputStream.cpp | 2 1 + 1 - 0 !
src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobOutputStream.cpp | 2 1 + 1 - 0 !
src/corelibs/U2Formats/src/sqlite_dbi/SQLiteDbi.cpp | 2 1 + 1 - 0 !
src/plugins/dbi_bam/src/Dbi.cpp | 2 1 + 1 - 0 !
6 files changed, 6 insertions(+), 6 deletions(-)

 tried to use debian packages sqlite3
 but failed because package does not build that way

data/snp_scripts/rsnp.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 using python3 as the interpreter

src/ugenecl/ugenecl.pri | 2 1 + 1 - 0 !
src/ugenem/ugenem.pro | 2 1 + 1 - 0 !
src/ugeneui/ugeneui.pri | 2 1 + 1 - 0 !
3 files changed, 3 insertions(+), 3 deletions(-)

 setting the rpath so that private shared libraries are found

src/corelibs/U2Private/src/PluginSupportImpl.cpp | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 looking for plugins in their debian install directory

src/libs_3rdparty/samtools/src/samtools_core/htslib/htscodecs/htscodecs/rANS_static32x16pr.h | 22 0 + 22 - 0 !
src/libs_3rdparty/samtools/src/samtools_core/htslib/htscodecs/htscodecs/rANS_static4x16pr.c | 10 0 + 10 - 0 !
2 files changed, 32 deletions(-)

 removing _neon signatures to avoid build failure on aarch64

src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/hashGrid.h | 2 1 + 1 - 0 !
src/plugins_3rdparty/ball/src/source/DATATYPE/hashGrid.cpp | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 indicating we use signed char, so that we don't depend on the
 default choice of the implementation

src/plugins_3rdparty/primer3/src/primer3_core/read_boulder.c | 8 0 + 8 - 0 !
1 file changed, 8 deletions(-)

 this extern declaration makes the build fail with gcc-15.