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#!/usr/bin/make -f
# DH_VERBOSE := 1
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export DEB_CPPFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP
export DEB_CPPFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_NATIVE_ALIASES
export DEB_CFLAGS_MAINT_APPEND += -fopenmp-simd -O3
export DEB_CXXFLAGS_MAINT_APPEND += -fopenmp-simd -O3
export PYBUILD_NAME=pyabpoa
%:
dh $@ --with=python3 --buildsystem=pybuild
execute_after_dh_auto_build:
ifeq ($(DEB_HOST_ARCH),amd64)
set -e \
; for SIMDE in avx2 avx sse4.1 ssse3 sse3 \
; do CFLAGS="$(CFLAGS) -m$${SIMDE}" \
CXXFLAGS="$(CXXFLAGS) -m$${SIMDE}" \
dh_auto_build --buildsystem=makefile -- all \
; mv -v bin/abpoa bin/abpoa.$${SIMDE} \
; dh_auto_clean --buildsystem=makefile -- clean \
; done
endif
dh_auto_build --buildsystem=makefile -- all
mv -v bin/abpoa bin/abpoa.generic
cp debian/abpoa-dispatch.sh bin/abpoa
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
# Tests from the README.md document
./bin/abpoa ./test_data/seq.fa > cons.fa
./bin/abpoa ./test_data/heter.fa > 2cons.fa
./bin/abpoa -r1 ./test_data/seq.fa > out.msa
./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa
./bin/abpoa -r3 ./test_data/seq.fa > out.gfa
./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa
cp out.gfa in.gfa
cp out.msa in.msa
./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa
./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa
./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa
./bin/abpoa ./test_data/heter.fa -d2
endif
override_dh_gencontrol:
dh_gencontrol -- \
-Vsimde:Built-Using="$(shell dpkg-query -f '$${source:Package} (= $${source:Version}), ' -W "libsimde-dev")"
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