1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353
|
abyss (2.2.5+dfsg-1) unstable; urgency=medium
* s/bsdmainutils/bsdextrautils/
Required for abyss-tabtomd, which needs /usr/bin/column
Closes: #964532
* Standards-Version: 4.5.1 (routine-update)
* Remove default debian/gbp.conf
* Remove unneeded docs of btllib since these contain compressed JS
-- Andreas Tille <tille@debian.org> Fri, 04 Dec 2020 14:42:34 +0100
abyss (2.2.5-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
-- Andreas Tille <tille@debian.org> Thu, 01 Oct 2020 13:24:22 +0200
abyss (2.2.4-1) unstable; urgency=medium
* New upstream version
* spelling patch incorporated upstream, removed it
* Remove markdown from the nodoc build profile, to allow for cross-building
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 11 Feb 2020 15:39:45 +0100
abyss (2.2.3-2) unstable; urgency=medium
* Use libtext-multimarkdown-perl to obtain html documentation
Closes: #942908
* Standards-Version: 4.4.1
-- Andreas Tille <tille@debian.org> Sun, 15 Dec 2019 00:00:48 +0100
abyss (2.2.3-1) unstable; urgency=medium
* New upstream version
* Remove strict-alignment patch as per upstream:
"Adding an additionally memcpy would slow down these inner-loop functions.
Architectures without hardware support for unaligned memory access are
currently unsupported by ABySS."
https://github.com/bcgsc/abyss/pull/279#issuecomment-468079889
* Turn off the 32-bit patch for now. Local testing with i386 shows that it
may not be needed as suggested by upstream.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 28 Sep 2019 12:04:53 +0200
abyss (2.2.2-1) unstable; urgency=medium
* New upstream version
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 17 Aug 2019 08:53:07 +0200
abyss (2.2.1-1) unstable; urgency=medium
* New upstream release, should fix failing builds on 32-bit architectures.
* Remove unused libgtest-dev dependency, as it is unused and may be causing
an error on hurd
* debhelper-compat 12
* Standards-Version: 4.4.0
* Use secure URI in debian/watch.
* Set upstream metadata fields: Contact.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 13 Aug 2019 12:38:14 +0200
abyss (2.2.0-1) unstable; urgency=medium
* New upstream.
* Several patches incorporated upstream and removed
* Merged upstream's copyright file with debian/copyright
-- Michael R. Crusoe <michael.crusoe@gmail.com> Thu, 08 Aug 2019 16:48:50 +0200
abyss (2.1.5-7) unstable; urgency=medium
* Add myself as an uploader.
* The package openmpi-bin is now a required dependency for the abyss
binary package. Many thanks to ci.debian.org for bringing this to light.
* Fix "implicit declaration of function"s in dialign/museq.c
* Fix some spelling typos
* Register the flowchart PDFs with doc-base
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 17 Feb 2019 05:19:54 -0800
abyss (2.1.5-6) unstable; urgency=high
* Team upload.
* Add dependency on openmpi-common for error messages
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 16 Feb 2019 01:52:28 -0800
abyss (2.1.5-5) unstable; urgency=medium
* Team upload.
* Fix MPI build. Closes: #922351
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 15 Feb 2019 06:23:47 -0800
abyss (2.1.5-4) unstable; urgency=medium
* Fix build on hurd due to missing header file (thanks for the patch
to Samuel Thibault <sthibault@debian.org>)
Closes: #920240
* debhelper 12
-- Andreas Tille <tille@debian.org> Wed, 23 Jan 2019 15:49:21 +0100
abyss (2.1.5-3) unstable; urgency=medium
* Re-add armel architecture
Closes: #918735
-- Andreas Tille <tille@debian.org> Wed, 09 Jan 2019 21:23:43 +0100
abyss (2.1.5-2) unstable; urgency=medium
* Restrict set of architectures to those where package is known to
build (or never was successfully build)
Closes: #918575
* Standards-Version: 4.3.0
-- Andreas Tille <tille@debian.org> Tue, 08 Jan 2019 15:53:09 +0100
abyss (2.1.5-1) unstable; urgency=medium
* Fix strict alignment violation on sparc64 (Thanks to David Matthew Mattli
and James Clarke)
Closes: #889147
* New upstream version
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
-- Andreas Tille <tille@debian.org> Sat, 08 Dec 2018 07:24:02 +0100
abyss (2.1.1-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.2.1
* Fix Perl interpreter path
-- Andreas Tille <tille@debian.org> Wed, 26 Sep 2018 13:30:44 +0200
abyss (2.1.0-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
-- Andreas Tille <tille@debian.org> Fri, 20 Apr 2018 10:04:32 +0200
abyss (2.0.3-1) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: RRID -> SciCrunch
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
-- Andreas Tille <tille@debian.org> Tue, 20 Mar 2018 14:33:26 +0100
abyss (2.0.2-3) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add simple autopkgtest test-suite.
[ Steffen Moeller ]
* [debian/upstream/metadata] Added references to bio.tools, OMICtools
and RRID
[ Sascha Steinbiss ]
* Add missing dependency on bsdmainutils.
* Use HTTPS URL for Format entry in d/copyright.
* Bump Standards-Version.
-- Nadiya Sitdykova <rovenskasa@gmail.com> Fri, 30 Jun 2017 16:56:26 -0400
abyss (2.0.2-2) unstable; urgency=medium
* FTBFS on mips and other big-endian architectures (Thanks for the patch
to Daniel Knezevic <Daniel.Knezevic@imgtec.com>)
Closes: #847574
* debhelper 10
* d/watch: version=4
-- Andreas Tille <tille@debian.org> Sun, 11 Dec 2016 14:24:34 +0100
abyss (2.0.2-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 01 Nov 2016 12:06:10 +0100
abyss (2.0.1-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version now licensed under GPL-3
* Moved package to main
* cme fix dpkg-control
* use markdown to create doc
* hardening=+all
[ Gert Wollny ]
* Force gtest to use c++11 based std::tuple
-- Andreas Tille <tille@debian.org> Mon, 10 Oct 2016 19:57:56 +0200
abyss (1.9.0-1) unstable; urgency=medium
* New upstream version
Adapted patches
* Took over COPYRIGHT from upstream as debian/copyright
* Dropped Shaun Jackman from Uploaders since he confirmed that he will not
be able to maintain the package
* Build-Depends: libsqlite3-dev
* Script uses bash syntax so request bash interpreter
-- Andreas Tille <tille@debian.org> Thu, 16 Jul 2015 11:28:54 +0200
abyss (1.5.2-2) unstable; urgency=medium
* abyss-fixmate and DistanceEst are expected to be in /usr/bin by sga
* configure was missing ghc -> mention this fact in README.source for
further inspection
* Fix FTBFS on 32-bit architectures (thanks for the patch to Graham
Inggs <graham@nerve.org.za>)
Closes: #780409
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Mon, 18 May 2015 14:24:21 +0200
abyss (1.5.2-1) unstable; urgency=medium
* New upstream version (remove applied patches)
* d/watch: Moved to github
* d/control+d/rules: use dh-autoreconf
* d/control: Build-Depends: libtext-multimarkdown-perl
* cme fix dpkg-control
* d/control: Build-Depends: libgtest-dev to enable unit tests at build time
* d/control: drop copy of citation info from long description
* patch to make gtest work (thanks to Anthony Raymond <traymond@bcgsc.ca>)
* Drop privacy breach in doc
-- Andreas Tille <tille@debian.org> Mon, 15 Sep 2014 14:53:24 +0200
abyss (1.3.6-1) unstable; urgency=low
* Team upload (Closes: #722072).
e05ee57 Imported Upstream version 1.3.5
b391f1f Imported Upstream version 1.3.6 (Closes: #702440)
7edc28b Signal the use of git-buildpackage with this configuration file.
a3beaac Normalised source package control file with config-model-edit.
dd86394 Conforms with Policy version 3.9.4.
71d42ad Normalised VCS URLs.
-- Charles Plessy <plessy@debian.org> Sun, 08 Sep 2013 11:36:44 +0900
abyss (1.3.4-4) unstable; urgency=low
* Team upload.
* Fix FTBFS with gcc-4.8, -Werror=unused-local-typedefs.
* Enable parallel build.
-- Dmitrijs Ledkovs <dmitrij.ledkov@ubuntu.com> Mon, 01 Jul 2013 21:06:59 +0100
abyss (1.3.4-3) unstable; urgency=low
* Disable POPCNT
Closes: #697344
* Add debian/README.debian to inform users about this change asking
for some comparison of the speed to consider other means for better
performance
-- Andreas Tille <tille@debian.org> Fri, 04 Jan 2013 11:07:10 +0100
abyss (1.3.4-2) unstable; urgency=low
* Team upload
* debian/upstream: BibTeX compliant authors
-- Andreas Tille <tille@debian.org> Fri, 01 Jun 2012 08:38:29 +0200
abyss (1.3.4-1) unstable; urgency=low
* New upstream release.
* debian/copyright: Add CityHash, which has an Expat license.
* debian/control: Bump Standards-Version to 3.9.3.1.
-- Shaun Jackman <sjackman@debian.org> Thu, 31 May 2012 11:39:13 -0700
abyss (1.3.3-2) unstable; urgency=low
* debian/control:
- Team maintenance in Debian Med team
- Moved packaging to Git
* debian/upstream: Add citation information
* debhelper 9 (control+compat)
* debian/copyright: Add github as another location for obtaining
the source
-- Andreas Tille <tille@debian.org> Sun, 01 Apr 2012 08:44:48 +0200
abyss (1.3.3-1) unstable; urgency=low
* New upstream release.
* Some components are dual-licensed BCCA-Academic or GPL-3+.
* Bump Standards-Version to 3.9.3.
-- Shaun Jackman <sjackman@debian.org> Tue, 13 Mar 2012 15:43:49 -0700
abyss (1.3.2-1) unstable; urgency=low
* New upstream release.
-- Shaun Jackman <sjackman@debian.org> Tue, 13 Dec 2011 17:04:24 -0800
abyss (1.3.1-1) unstable; urgency=low
* New upstream release.
-- Shaun Jackman <sjackman@debian.org> Mon, 24 Oct 2011 11:32:59 -0700
abyss (1.3.0-1) unstable; urgency=low
* New upstream release.
* Add libboost-graph-dev to Build-Depends.
-- Shaun Jackman <sjackman@debian.org> Sun, 11 Sep 2011 10:00:13 -0700
abyss (1.2.7-3) unstable; urgency=low
* Align/Aligner.cpp, Scaffold/scaffold.cc: Fix FTBFS bug for GCC 4.6.
-- Shaun Jackman <sjackman@debian.org> Mon, 15 Aug 2011 11:07:19 -0700
abyss (1.2.7-2) unstable; urgency=low
* debian/control: Add `XS-Autobuild: yes'. Suggest openmpi-bin.
* debian/copyright: Change `Format-Specification' to `Format'.
-- Shaun Jackman <sjackman@debian.org> Thu, 21 Jul 2011 09:55:52 -0700
abyss (1.2.7-1) unstable; urgency=low
* Initial release. Closes: #631534.
-- Shaun Jackman <sjackman@debian.org> Fri, 24 Jun 2011 12:16:36 -0700
|