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#!/usr/bin/make -f
export DEB_CXXFLAGS_MAINT_APPEND = -DGTEST_USE_OWN_TR1_TUPLE=0
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export DH_OPTIONS
%:
dh $@
override_dh_auto_configure:
dh_auto_configure -- \
--with-mpi=$(shell pkg-config mpi --variable=includedir | sed s=/include==)
override_dh_auto_build:
dh_auto_build
ifeq (,$(filter nodoc,$(DEB_BUILD_PROFILES) $(DEB_BUILD_OPTIONS)))
markdown README.md > README.html
endif
override_dh_auto_install:
dh_auto_install --destdir=debian/tmp
PATH=debian/tmp/usr/bin:$(PATH) help2man --no-info \
-n "Estimate distances between contigs using paired-end alignments." \
DistanceEst > debian/tmp/usr/share/man/man1/DistanceEst.1
PATH=debian/tmp/usr/bin:$(PATH) help2man --no-info \
-n "Fill the paired-end fields of SAM alignments" abyss-fixmate \
> debian/tmp/usr/share/man/man1/abyss-fixmate.1
override_dh_install:
dh_install
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
done
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