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abyss 2.3.1-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 16,076 kB
  • sloc: cpp: 119,071; ansic: 6,510; makefile: 2,217; java: 2,094; sh: 754; perl: 672; haskell: 412; python: 45
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Source: abyss
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
           Michael R. Crusoe <crusoe@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               libboost-graph-dev,
               libopenmpi-dev,
               libsparsehash-dev,
               libtext-multimarkdown-perl <!nodoc>,
               libsqlite3-dev,
               pkg-config,
               help2man
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/abyss
Vcs-Git: https://salsa.debian.org/med-team/abyss.git
Homepage: https://github.com/bcgsc/abyss
Rules-Requires-Root: no

Package: abyss
Architecture: any-amd64 arm64 armel armhf any-i386 mips64el mipsel ppc64el s390x alpha ia64 m68k powerpcspe ppc64 riscv64 sh4 sparc64 x32
Depends: make,
         ${shlibs:Depends},
         ${misc:Depends},
         ${perl:Depends},
         bsdextrautils,
# For openmpi error messages:
         openmpi-common,
# for /usr/bin/orted and possibly other MPI components:
         openmpi-bin
Description: de novo, parallel, sequence assembler for short reads
 ABySS is a de novo, parallel, sequence assembler that is designed for
 short reads. It may be used to assemble genome or transcriptome
 sequence data. Parallelization is achieved using MPI, OpenMP and
 pthread.