1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
|
#ifndef ASSEMBLY_SEQUENCECOLLECTION_H
#define ASSEMBLY_SEQUENCECOLLECTION_H 1
#include "config.h"
#include "SeqExt.h"
#include "VertexData.h"
#include "Common/Kmer.h"
typedef VertexData<uint8_t, SeqExt> KmerData;
typedef KmerData::SymbolSetPair ExtensionRecord;
#if HAVE_GOOGLE_SPARSE_HASH_MAP
# include <google/sparse_hash_map>
typedef google::sparse_hash_map<Kmer, KmerData, hash<Kmer> >
SequenceDataHash;
#else
# include "Common/UnorderedMap.h"
typedef unordered_map<Kmer, KmerData, hash<Kmer> >
SequenceDataHash;
#endif
#include "Assembly/DBG.h"
#include "Assembly/BranchRecord.h"
#endif
|