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#include "Common/Kmer.h"
#include <gtest/gtest.h>
#include <iostream>
TEST(Kmer, canonicalize)
{
Kmer::setLength(4);
Kmer canonical("ATGC");
Kmer nonCanonical("GCAT");
Kmer palindrome("ACGT");
Kmer kmer = canonical;
kmer.canonicalize();
EXPECT_EQ(canonical, kmer);
kmer = nonCanonical;
kmer.canonicalize();
EXPECT_EQ(canonical, kmer);
kmer = palindrome;
kmer.canonicalize();
EXPECT_EQ(palindrome, kmer);
Kmer::setLength(5);
Kmer oddLength("GCTCG");
Kmer oddLengthCanonical("CGAGC");
kmer = oddLength;
kmer.canonicalize();
EXPECT_EQ(oddLengthCanonical, kmer);
}
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