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#!/bin/sh -e
pkg=abyss
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
# Double quote below to expand the temporary directory variable now versus
# later is on purpose.
# shellcheck disable=SC2064
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cd "${AUTOPKGTEST_TMP}"
cp -a /usr/share/doc/${pkg}/test-data/ .
gunzip -r ./*
abyss-pe B=1G k=25 name=test in='test-data/reads1.fastq test-data/reads2.fastq'
# It is okay if the echo comman can't respect "-n" and includes a newline
# shellcheck disable=SC2039
echo -n Testing mpi compilation: ...
/usr/lib/abyss/ABYSS-P --help > /dev/null
echo " success!"
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