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Source: abyss
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Michael R. Crusoe <crusoe@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
libboost-graph-dev,
libopenmpi-dev,
libsparsehash-dev,
libtext-multimarkdown-perl <!nodoc>,
libsqlite3-dev,
pkg-config,
help2man,
debhelper
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/abyss
Vcs-Git: https://salsa.debian.org/med-team/abyss.git
Homepage: https://github.com/bcgsc/abyss
Rules-Requires-Root: no
Package: abyss
Architecture: any-amd64 arm64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha
Depends: make,
${shlibs:Depends},
${misc:Depends},
${perl:Depends},
bsdextrautils,
# For openmpi error messages:
openmpi-common,
# for /usr/bin/orted and possibly other MPI components:
openmpi-bin
Description: de novo, parallel, sequence assembler for short reads
ABySS is a de novo, parallel, sequence assembler that is designed for
short reads. It may be used to assemble genome or transcriptome
sequence data. Parallelization is achieved using MPI, OpenMP and
pthread.
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