1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
|
# File wscripts/gb.awk, postprocessing commands used by blast_search script
# $Id: gb.awk,v 1.1 1997/03/28 12:59:54 mieg Exp $
BEGIN { state = 0 ;}
/^ACCESSION/ {seq = "GB:"$2 ; printf("\nSequence %s\nDatabase GenBank %s\n",seq,$2); next;}
/^TITLE/ {printf("Title \"%s\n", substr($0,6)) ; next ;}
/^\/\// {state = 0 ; printf("\n") ; next; }
/^ORIGIN/ {printf ("DNA %s\n\n",seq) ; state = 2 ; next ;}
{ if (state == 2) { printf("DNA %s\n", seq) ; state = 3 ; next ; }
if (state == 3)
{ pp = $0 ; gsub(/[0-9]/,"",pp) ; gsub(/ /,"",pp) ; gsub(/\//,"",pp) ;
printf("%s\n", pp) ;
}
}
|
