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/* File: metadata.c
* Author: Danielle et Jean Thierry-Mieg (mieg@mrc-lmb.cam.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1993
* -------------------------------------------------------------------
* Acedb is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
* or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
* -------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
First run the script wtools/parsecode
Then read the file generated that way called code.ace
Then run this program
This results in cross referencing the includes, tags and
classes used in the code
* Exported functions:
void metaCheckCode(void)
* HISTORY:
* Last edited: Jul 9 11:48 2003 (rnc)
* Created: Wed Apr 21 20:22:39 1993 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: metadata.c,v 1.14 2003/07/09 13:20:25 rnc Exp $ */
#include "acedb.h"
#include "lex.h"
#include "a.h"
#include "bs.h"
#include "session.h"
#include "pick.h"
#include "utils.h" /* for lexstrcmp */
#include "whooks/sysclass.h"
#include "whooks/systags.h"
static int _VInclude, _VSourceCode, _VTag ; /* metadata class, not used by the kernel */
/********************************************************/
static void metaCheckTagConsistency(void)
{ KEY tag = 0 , metaTag = KEYMAKE(_VTag,0) ;
int n ;
OBJ obj ; char *cp ;
if (iskey(KEYMAKE(_VTag,0)) != 2)
return ; /* i.e. the Tag model does not yet exists */
/* tag to metatag injection */
while (lexNext(_VSystem, &tag))
{ lexaddkey(name(tag), &metaTag, _VTag) ;
obj = bsUpdate(metaTag) ;
if (bsGetData(obj, _Parent_tag, _Text, &cp))
{ if (lexstrcmp(cp, name(tag)))
messerror ("Tag %s has somehow been renamed as %s",
cp, name(tag)) ;
if (bsGetData(obj, _bsRight, _Int, &n) && n!= 458 && n!= 478)
{ if ( n != tag )
messerror ("Tag %s has been renumbered, old value %d, new %d",
name(tag), n, tag);
}
}
bsAddData(obj, _Parent_tag, _Text, name(tag)) ;
n = tag ; /* to cast to int */
bsAddData(obj, _bsRight, _Int, &n) ;
bsSave (obj) ; /* Those operation are often null, hence quick and harmless */
}
/* is it a surjection */
metaTag = 0 ;
while (lexNext(_VTag, &metaTag))
if ((obj = bsCreate(metaTag)))
{
if (bsGetData(obj, _Parent_tag, _Text, &cp) &&
bsGetData(obj, _bsRight, _Int, &n) &&
strncmp(cp,"__sys", 5) &&
n != 458 && n != 478 ) /* A fix, Because 458 is Semi_dominant, was demi-dominant */
{ if (!lexword2key(cp, &tag, _VSystem))
messerror ("Tag %s %d has somehow disappeared from wspec",
cp, n) ;
if (lexstrcmp(cp, name(tag)))
messerror ("Tag %d has been renamed, old name %s, new name %s",
n, cp, name(tag)) ;
if (n != tag )
messerror ("Tag %s has been renumbered, old value %d, new %d",
name(metaTag), n, tag);
}
bsDestroy (obj) ; /* Those operation are often null, hence quick and harmless */
}
}
/************************************************************/
void metaCheckCode(void)
{
KEY key, codeText, code , metaTag , metaClass, incl ;
char *cp, *cq , cutter;
Stack s ;
int level , nt = 0, nc= 0, ni = 0 ;
OBJ Code ;
if (!sessionGainWriteAccess())
{
messout("Sorry, you cannot gain write access") ;
return ;
}
lexaddkey ("Include", &key, _VMainClasses) ; _VInclude = KEYKEY (key) ;
lexaddkey ("SourceCode", &key, _VMainClasses) ; _VSourceCode = KEYKEY (key) ;
lexaddkey ("Tag", &key, _VMainClasses) ; _VTag = KEYKEY (key) ;
metaCheckTagConsistency() ;
code = 0 ;
while (lexNext(_VSourceCode, &code))
{
if((Code = bsUpdate(code)))
{
if(bsFindTag(Code, _Includes))
bsRemove(Code) ;
if(bsFindTag(Code, _Uses_tags))
bsRemove(Code) ;
if(bsFindTag(Code, _Uses_class))
bsRemove(Code) ;
if (bsGetKey(Code, _SourceFile, &codeText) &&
(s = stackGet(codeText) ))
{ stackCursor(s, 0) ;
while ((cp = stackNextText(s)))
{ level = freesettext(cp, "") ;
while (freecard(level))
if ((cq = freeword()) && !strcmp(cq, "#include"))
{
freenext() ;
cq = freeword() ;
if (lexword2key(cq, &incl, _VInclude))
{ ni++ ;
bsAddKey(Code, _Includes, incl) ;
}
else
printf("Unrecognised include: %s in %s \n", cp, name(code)) ;
}
else while ( freenext(),
(cq = freewordcut(" {}()[],.;:=!#>?\"", &cutter), cq || cutter))
if (cq && *cq == '_' && *(cq+1) == 'V')
{ if (lexword2key(cq+2, &metaClass, _VClass))
{ nc++ ; bsAddKey(Code, _Uses_class, metaClass) ; }
else
fprintf(stderr, "Unrecognised class %s in %s \n", cq ? cq : "Null", name(code)) ;
}
else if (cq && *cq == '_')
{ if (lexword2key(cq+1, &metaTag, _VTag))
{ nt++; bsAddKey(Code, _Uses_tags, metaTag) ; }
else
fprintf(stderr, "Unrecognised tag %s in %s \n", cq ? cq : "Null", name(code)) ;
}
}
stackDestroy(s) ;
}
bsSave(Code) ;
}
}
printf ("#*#*#*# Found %d tags, %d classes %d inclusions \n\n", nt, nc, ni) ;
}
/***********************************/
int main (int argc, char **argv)
{
if (argc >= 2)
aceInit(argv[1]);
metaCheckCode ();
return 0;
}
/***********************************/
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