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#!/bin/csh -f
# $Id: bioMotif,v 1.2 1997/02/04 15:36:26 mieg Exp $
# This is a call to Gerard Menessier's motif search program
#echo calling motifAce $*
#echo $*
#echo ok
#
#echo $5
#
#cat $5
#
#
#echo $7
#
#cat $7
if (! $?BIOMOTIF_DIR) then
if (-d ~/bioMotif) then
setenv BIOMOTIF_DIR ~/bioMotif
else
if (-e /usr/local/bioMotif) then
setenv BIOMOTIF_DIR /usr/local/bioMotif
else
if (-e ./bioMotif) then
setenv BIOMOTIF_DIR ./bioMotif
endif
endif
endif
endif
if ($?BIOMOTIF_DIR) then
if (-x $BIOMOTIF_DIR/bioMotif_bin/bioMotif ) then
#echo $BIOMOTIF_DIR/bioMotif_bin/bioMotif $*
$BIOMOTIF_DIR/bioMotif_bin/bioMotif $*
exit 0
endif
endif
echo Sorry, i cannot Find bioMotif
echo May be you should setenv BIOMOTIF_DIR so that
echo BIOMOTIF_DIR/bioMotif_bin/bioMotif is the executable
echo ' '
if ($?BIOMOTIF_DIR) then
echo now BIOMOTIF_DIR: $BIOMOTIF_DIR
else
echo now BIOMOTIF_DIR is not set
endif
echo ' '
echo Biomotif is a program by Gerard Menessier which
echo can search dna for mixed dna and amino motifs mixed
echo with hydrophobicity or other requirements in a very general way
echo ' '
echo You can import bioMotif from ftp://ftp.lpm.univ-montp2.fr/pub/BioMotif
pwd
exit 1
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