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!
! ADIOS is freely available under the terms of the BSD license described
! in the COPYING file in the top level directory of this source distribution.
!
! Copyright (c) 2008 - 2009. UT-BATTELLE, LLC. All rights reserved.
!
!
! Coupling writer/reader
!
! Read a 2D array
! to/from a file or from/to another coupling code using DataSpaces/ADIOS
!
! npx * npy processes write a 2D array, where each process writes an
!
! Data written
! xy 2D global array as received from the writers
! xy2 2D array with block,* decomp
!
! All data are real*8 type
!
! (c) Oak Ridge National Laboratory, 2009
! Author: Norbert Podhorszki
!
module coupling_reader_2D_comm
! arguments
integer :: npx, npy, npz ! # of processors in x-y-z direction
integer :: read_method ! 0=bp, 1=hdf5, 2=dart, 3=dimes
integer :: read_mode ! 0=whole array on each process
! 1=1D decomposition on 1st dim
integer :: nproc ! number of processors
real*8, dimension(:,:), allocatable :: xy, xy2
! Offsets and sizes
integer :: ox, oy
integer :: ldx, ldy
integer :: gdx, gdy
! MPI variables
integer :: group_comm, self_comm
integer :: rank
integer :: ierr
! ADIOS variables
character (len=200) :: group
!character (len=6) :: nprocstr
integer*8 :: adios_totalsize, adios_groupsize, adios_buf_size
integer :: adios_err
integer*8 :: inh ! input file handle
integer*8 :: adios_handle ! output file handle (used by gwrite too)
character(len=256) :: infn ! filename
integer :: wts ! writer's output timestep index (read from 1,2...)
logical, parameter :: dump_text = .true.
end module coupling_reader_2D_comm
program coupling
use coupling_reader_2D_comm
use adios_read_mod
implicit none
include 'mpif.h'
integer :: key, color
real*8 :: t1,t2,io_time
call MPI_Init (ierr)
call MPI_Barrier(MPI_COMM_WORLD, ierr)
call MPI_Comm_rank(MPI_COMM_WORLD, key, ierr)
! Split MPI_COMM_WORLD for MPMD execution
color = 2
call MPI_Comm_split(MPI_COMM_WORLD, color, key, group_comm, ierr)
call MPI_Comm_dup (MPI_COMM_SELF, self_comm, ierr)
call MPI_Comm_rank (group_comm, rank, ierr)
call MPI_Comm_size (group_comm, nproc , ierr)
call processArgs()
if (rank == 0) then
print '(" Process number : ",i0," x ",i0)', npx,npy
print '(" Method for reading: ",i0)', read_method
if (nproc .ne. npx*npy) then
print '(" Error: Number of processors ",i0,"does not match N*M=",i0)', nproc, npx*npy
call exit(1)
endif
endif
write (infn,'("writer.bp")')
if (rank==0) print *, " Input file: "//trim(infn)
call adios_read_init_method (read_method, group_comm, "verbose=4; app_id=2; poll_interval=1000", ierr);
call adios_init("coupling_reader_2D.xml", group_comm, ierr)
!call MPI_Barrier (group_comm, ierr)
!write (*,*) 'rank ', rank, "init completed"
!write (nprocstr,'(i0)') nproc
call adios_read_open (inh, infn, read_method, group_comm, ADIOS_LOCKMODE_CURRENT, 180.0, ierr)
if (ierr .ne. 0) then
print '(" Failed to open stream: ",a)', infn
print '(" open stream ierr=: ",i0)', ierr
call exit(1)
endif
t1=0;
t2=0;
call MPI_Barrier (group_comm, ierr)
wts = 1 ! start reading from writer's 1st step
do while (ierr==0)
call MPI_Barrier (group_comm, ierr)
t1=MPI_Wtime();
call readArrays()
call MPI_Barrier (group_comm, ierr)
t2=t2+(MPI_Wtime()-t1);
call adios_release_step(inh, ierr)
call printArrays()
call advanceArrays()
call MPI_Barrier (group_comm, ierr)
call adios_advance_step(inh, 0, 10.0, ierr)
if (ierr==err_end_of_stream .and. rank==0) then
print *, " Stream has terminated. Quit reader"
elseif (ierr==err_step_notready .and. rank==0) then
print *, " Next step has not arrived for a while. Assume termination"
endif
wts = wts+1
enddo
call adios_read_close (inh, ierr)
! call mpi_allreduce(t2, io_time, 1, MPI_INTEGER, MPI_MAX,group_comm, ierr)
if(rank==0) then
print '("Total read time = ", d12.2)', t2
endif
! Terminate
call MPI_Barrier (group_comm, ierr)
call adios_read_finalize_method (read_method, ierr)
call adios_finalize (rank, ierr)
call MPI_Finalize (ierr)
end program coupling
!!***************************
subroutine readArrays()
use coupling_reader_2D_comm
use adios_read_mod
implicit none
integer :: i,j,k
integer*8 :: sel
integer*8, dimension(3) :: offset, readsize
! read gdx and gdy
print '("rank=",i0,": Read in gdx and gdy, step",i0," from ",a)', rank, wts, trim(infn)
call adios_get_scalar (inh,"gdx",gdx, ierr)
call adios_get_scalar (inh,"gdy",gdy, ierr)
print '("rank=",i0,": Got scalars gdx ",i0," gdy ",i0)', rank, gdx, gdy
! Calculate the local x,y offsets
if (read_mode == 0) then
! each process reads the whole array
ldx = gdx
ldy = gdy
ox = 0
oy = 0
elseif (read_mode == 1) then
ldx = gdx / nproc
ldy = gdy
ox = rank * ldx
oy = 0
! last process should read all the rest of columns
if (rank == nproc-1) then
ldx = gdx - ldx*(nproc-1)
endif
endif
if (.not. allocated(xy)) then
allocate( xy (1:ldx, 1:ldy) )
allocate( xy2 (1:ldx, 1:ldy) )
endif
xy = -1.0 ! should be overwritten at reading the array next
! Read in the whole xy array
readsize(1) = ldx
readsize(2) = ldy
offset(1) = ox
offset(2) = oy
call adios_selection_boundingbox (sel, 2, offset, readsize)
print '("rank=",i0,": Read in xy(",i0,":",i0,",",i0,":",i0,") from ",a)', rank, &
offset(1)+1, offset(1)+readsize(1), &
offset(2)+1, offset(2)+readsize(2),trim(infn)
call adios_schedule_read (inh, sel, "xy", 0, 1, xy, ierr)
call adios_perform_reads (inh, ierr)
call adios_selection_delete (sel)
do j=1,ldy
do i=1,ldx
xy2(i,j) = rank*1.0 + xy(i,j)/100.0
enddo
enddo
call MPI_Barrier (group_comm, ierr)
end subroutine readArrays
!!***************************
subroutine printArrays()
use coupling_reader_2D_comm
use adios_write_mod
implicit none
integer, parameter :: u=20
character(len=256) :: outfn
integer :: i,j,k,writer
if (read_mode == 0) then
writer = mod(wts,nproc)
if (writer == rank) then
write (outfn, '("reader_",i3.3,".bp")') wts
call adios_open (adios_handle, "reader2D", outfn, "w", self_comm, adios_err)
#include "gwrite_reader2D.fh"
! start streaming from buffer to disk
call adios_close (adios_handle, adios_err)
print '("rank=",i0,": One process wrote xy and new xy2 to ",a)', rank, trim(outfn)
endif
if (dump_text) then
write (outfn, '("reader_",i3.3,"_",i0,".txt")') wts, rank
open (u, FILE=outfn, STATUS='NEW', FORM="FORMATTED")
! print xyz_bbb
write (u,'("xy(1:",i0,",1:",i0,") = ")') ldx, ldy
do j=1,ldy
do i=1,ldx
write (u, '(f6.2," ",$)') xy(i,j)
enddo
write (u,*) " " ! new line
enddo
close (u)
endif
elseif (read_mode ==1) then
write (outfn, '("reader_",i3.3,".bp")') wts
call adios_open (adios_handle, "reader2D", outfn, "w", group_comm, adios_err)
#include "gwrite_reader2D.fh"
! start streaming from buffer to disk
call adios_close (adios_handle, adios_err)
print '("rank=",i0,": Collectively wrote xy and new xy2 to ",a)', rank, trim(outfn)
endif
end subroutine printArrays
!!***************************
subroutine advanceArrays()
use coupling_reader_2D_comm
implicit none
xy = 0.9 * xy
xy2 = 0.9 * xy2
end subroutine advanceArrays
!!***************************
subroutine usage()
print *, "Usage: coupling_reader_2D N M method read-mode"
print *, "N: number of processes in X dimension"
print *, "M: number of processes in Y dimension"
print *, "read method: DATASPACES or DIMES for memory-to-memory coupling,"
print *, " otherwise file-based"
print *, "read-mode: 0: each process reads whole global array"
print *, " 1: 1D decomposition in 1st dimension"
end subroutine usage
!!***************************
subroutine processArgs()
use coupling_reader_2D_comm
use adios_read_mod
#ifndef __GFORTRAN__
!#ifndef __GNUC__
interface
integer function iargc()
end function iargc
end interface
!#endif
#endif
character(len=256) :: npx_str, npy_str, method_str, mode_str, ts_str
integer :: numargs
!! process arguments
numargs = iargc()
!print *,"Number of arguments:",numargs
if ( numargs < 4 ) then
call usage()
call exit(1)
endif
call getarg(1, npx_str)
call getarg(2, npy_str)
read (npx_str,'(i5)') npx
read (npy_str,'(i5)') npy
call getarg(3, method_str)
if (trim(method_str) .eq. "DATASPACES") then
read_method = ADIOS_READ_METHOD_DATASPACES
elseif (trim(method_str) .eq. "DIMES") then
read_method = ADIOS_READ_METHOD_DIMES
elseif (trim(method_str) .eq. "FLEXPATH") then
read_method = ADIOS_READ_METHOD_FLEXPATH
else
read_method = ADIOS_READ_METHOD_BP
endif
call getarg(4, mode_str)
read (mode_str,'(i5)') read_mode
if (read_mode < 0 .or. read_mode > 1) then
print *, "Argument error: read_mode must be 0 or 1"
call usage()
call exit(2)
endif
end subroutine processArgs
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