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|
#!/bin/bash
#
# This script is for configuring adios on the authors' machines
# You can study it to figure out how to configure adios on your system
#
SRCDIR=`dirname ${BASH_SOURCE[0]}`
BUILD_FULL=true
if [ x"$1" == x"lean" ]; then
BUILD_FULL=false
echo "Build ADIOS without extra packages"
fi
if [ `hostname | cut -c 1-4` == "rhea" ]; then
########
# Rhea #
########
source /etc/profile.d/modules.sh
TARGET=`module list 2>&1 | grep "PE"- | sed "s/^.*PE-\([a-z]*\).*/\1/"`
if [ -z "$TARGET" ]; then
echo "Cannot determine Programming environment. Exit"
exit 1
fi
echo "Configure on Rhea for $TARGET env. for user ${USER}"
module unload hdf5
module unload netcdf
module unload PE-gnu
module unload PE-pgi
module unload PE-intel
module unload PE-pathscale
module unload pgi gcc intel pathscale
module unload python
module load PE-$TARGET
#module load python
# Use both seq hdf5 (for utils) and
# parallel hdf5 (for PHDF5 method)
if [ $BUILD_FULL == "true" ]; then
echo "Load modules for full build"
module load hdf5/1.8.11
SEQ_HDF5_DIR=$HDF5_DIR
SEQ_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
module load hdf5-parallel/1.8.11
PAR_HDF5_DIR=$HDF5_DIR
PAR_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
# Seq. and Parallel NetCDF 4
module load netcdf/4.1.3
SEQ_NC_DIR=$NETCDF_DIR
SEQ_NC_CLIB=$NETCDF_CLIB
module unload netcdf
#module load netcdf/4.1.3_par
#PAR_NC_DIR=$NETCDF_DIR
#PAR_NC_CLIB=$NETCDF_CLIB
#module unload netcdf
#module load szip
#module load bzip2
module load dataspaces/1.6.2
module load flexpath/1.12
module load alacrity/1.0.0
module load fastbit/svn
fi
export MPICC=mpicc
export MPICXX=mpiCC
export MPIFC=mpif90
unset EXTRA_CFLAGS
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export EXTRA_CFLAGS="-std=c99"
WITHFLEX=""
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-g -fPIC ${EXTRA_CFLAGS}"
if [ $BUILD_FULL == "true" ]; then
echo "Configure for full build"
$SRCDIR/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/rhea.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-research-transports \
--with-lustre \
--with-dataspaces=$DATASPACES_DIR \
--with-flexpath=$FLEXPATH_DIR \
--with-alacrity=$ALACRITY_DIR \
--with-zlib \
--with-bzip2 \
--with-fastbit=$FASTBIT_DIR \
--with-hdf5=${SEQ_HDF5_DIR} \
--with-hdf5-libs="${SEQ_HDF5_CLIB}" \
#--with-phdf5=${PAR_HDF5_DIR} \
#--with-phdf5-libs="${PAR_HDF5_CLIB}" \
#--with-netcdf=${SEQ_NC_DIR} \
#--with-netcdf-libs="${SEQ_NC_CLIB}" \
#--with-nc4par=${PAR_NC_DIR} \
#--with-nc4par-libs="${PAR_NC_CLIB}" \
#--with-aplod=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-isobar=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-fgr=/ccs/proj/e2e/qliu/tap \
#--with-glib=/ccs/proj/e2e/qliu/glib
#--with-szip=$SZIP_DIR
else
echo "Configure for lean build"
$SRCDIR/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/rhea.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-lustre \
--disable-timers --disable-timer-events
fi
elif [ `hostname | cut -c 1-5` == "titan" ]; then
#source /opt/modules/default/etc/modules.sh
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
#########
# Titan #
#########
#TARGET=pgi
echo "Configure on TITAN (XK7) including staging methods for $TARGET env."
module unload szip
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
module unload fastbit
module unload craype-interlagos craype-interlagos-cu
module unload craype-barcelona craype-abudhabi craype-abudhabi-cu
module unload craype-ivybridge craype-sandybridge craype-haswell
module unload craype-mc8 craype-mc12
module load craype-istanbul
if [ $BUILD_FULL == "true" ]; then
module load dataspaces # /1.6.1
module load flexpath # /1.12
# NOTE hdf5-parallel module does not work with C++ compiler
#module load hdf5-parallel
#module load netcdf-hdf5parallel
#module load szip
#module load papi
fi
unset EXTRA_CFLAGS
unset EXTRA_LIBS
unset LDFLAGS
unset WITHFLEX
unset WITHFASTBIT
unset WITHSZ
export CC=cc
export FC=ftn
export CXX=CC
if [ "$TARGET" == "pgi" ]; then
if [ $BUILD_FULL == "true" ]; then
# FASTBIT needs libstdc++ and -pgcpplibs flag
export LDFLAGS="-pgc++libs"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/titan/$target-cpu"
WITHFLEX="--with-flexpath=$FLEXPATH_DIR"
#export EXTRA_LIBS="/opt/gcc/4.9.0/snos/lib64/libstdc++.a"
export EXTRA_LIBS="${GCC_PATH}/snos/lib64/libstdc++.a"
WITHSZ="--with-sz=/sw/xk6/adios/SZ/1.4.10.0/pgi16.10.0"
fi
export EXTRA_CFLAGS="-fast"
elif [ "$TARGET" == "gnu" ]; then
#export CC=gcc
#export FC=gfortran
#export CXX=g++
#export MPICC=cc
#export MPIFC=ftn
#export MPICXX=CC
# NSSI/FLEXPATH/FASTBIT needs libstdc++
export LDFLAGS=""
export EXTRA_CFLAGS="-Ofast"
if [ $BUILD_FULL == "true" ]; then
module load fastbit
WITHFLEX="--with-flexpath=$FLEXPATH_DIR"
#WITHFLEX="--with-flexpath=/ccs/proj/e2e/chaos/titan/$TARGET"
# FASTBIT needs libstdc++
#WITHFASTBIT="--with-fastbit=$FASTBIT_DIR"
#export EXTRA_LIBS="${GCC_PATH}/snos/lib64/libstdc++.a"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/titan/$TARGET"
WITHSZ="--with-sz=/sw/xk6/adios/SZ/1.4.10.0/gnu4.9.3"
fi
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
fi
# use the two lines below for openmpi
#export CC=mpicc
#export FC=mpif90
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK -DDART_DO_VERSIONING"
export CFLAGS="-fPIC -g ${EXTRA_CFLAGS}"
if [ $BUILD_FULL == "true" ]; then
LIBS="$EXTRA_LIBS" ${SRCDIR}/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/xk6.$TARGET \
--enable-dependency-tracking \
--disable-maintainer-mode \
--with-cray-pmi=/opt/cray/pmi/default \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--with-dataspaces=$DATASPACES_DIR \
--with-dimes=$DATASPACES_DIR \
--without-infiniband \
$WITHFLEX \
$WITHFASTBIT \
$WITHSZ \
--with-lustre \
--disable-timers --disable-timer-events \
--with-zlib --with-bzip2
#--enable-skel-timing
#--with-fgr=/ccs/proj/e2e/qliu/tap \
#--with-glib=/ccs/proj/e2e/qliu/glib \
#--with-netcdf=/opt/cray/netcdf/3.6.2/netcdf-${TARGET} \
#--with-hdf5=/sw/xt5/hdf5/1.8.2/cnl2.1_gnu4.2.0 \
#--with-nc4par=/opt/cray/netcdf-hdf5parallel/4.0.1.3/netcdf-hdf5parallel-$TARGET \
#--with-phdf5=/opt/cray/hdf5-parallel/1.8.4.1/hdf5-parallel-$TARGET \
#--with-dimes=/ccs/proj/e2e/pnorbert/spaces/$TARGET
#--with-nssi=/ccs/proj/e2e/pnorbert/nssi/xt5/$TARGET \
#--with-datatap=/ccs/home/zf2/work/pe.$TARGET \
#--with-datatap=/ccs/proj/e2e/pnorbert/datatap/xt5/$TARGET \
else
LIBS="$EXTRA_LIBS" ${SRCDIR}/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/xk6.$TARGET \
--enable-dependency-tracking \
--disable-maintainer-mode \
--with-lustre \
--disable-timers --disable-timer-events \
--without-infiniband
fi
elif [ `hostname | cut -c 1-4` == "eos-" ]; then
#################
# EOS Cray XC30 #
#################
#source /opt/modules/default/etc/modules.sh
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
echo "Configure on EOS (Cray XC30) for $TARGET env."
export CC=cc
#export CFLAGS="-Wall -g"
export FC=ftn
export CXX=CC
module unload szip
module unload hdf5
module unload netcdf
module unload netcdf-hdf5parallel
module unload hdf5-parallel
module unload papi
module unload pmi
if [ "$TARGET" == "pgi" ]; then
# NSSI needs -pgc++libs flag
export LDFLAGS="-pgc++libs"
unset EXTRA_LIBS
elif [ "$TARGET" == "gnu" ]; then
# NSSI needs libstdc++
unset LDFLAGS
export EXTRA_LIBS="/opt/gcc/4.8.1/snos/lib64/libstdc++.a"
module swap gcc gcc/4.8.1
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
else
unset LDFLAGS
unset EXTRA_LIBS
unset EXTRA_CFLAGS
fi
module load pmi
module load craype-hugepages2M
CFLAGS="-g -fPIC ${EXTRA_CFLAGS}" ${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/eos.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-cray-pmi=/opt/cray/pmi/default \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--with-dataspaces=/ccs/proj/e2e/dataspaces/eos/1.6.1/$TARGET \
--with-dimes=/ccs/proj/e2e/dataspaces/eos/1.6.1/$TARGET \
elif [ `hostname | cut -c 1-7` == "chester" ]; then
###############
# Chester XK6 #
###############
#source /opt/modules/default/etc/modules.sh
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
echo "Configure on Chester (XK6) for $TARGET env."
export CC=cc
export FC=ftn
export CXX=CC
module unload szip
module unload hdf5
module unload netcdf
module unload netcdf-hdf5parallel
module unload hdf5-parallel
module swap craype-interlagos craype-istanbul
module load dataspaces # /1.6.2
module load flexpath # /1.12
module load fastbit
WITHFASTBIT=""
WITHALACRITY=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export FC=pgf90
export CXX=pgc++
export MPICC=cc
export MPIFC=ftn
export MPICXX=CC
# FASTBIT, ALACRITY need -pgcpplibs flag
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/xk6/pgi"
export FLEXPATH="--with-flexpath=$FLEXPATH_DIR"
export LDFLAGS="-pgc++libs"
unset EXTRA_LIBS
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export FC=gfortran
export CXX=g++
export MPICC=cc
export MPIFC=ftn
export MPICXX=CC
# FASTBIT, ALACRITY needs libstdc++
# PROBLEM: there is libstdc++.so and libtool uses that in any case leading to link error
#WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/xk6/gnu"
#WITHFASTBIT="--with-fastbit=${FASTBIT_DIR}"
#export LDFLAGS="-static -static-libstdc++"
#export EXTRA_LIBS="${GCC_PATH}/snos/lib64/libstdc++.a"
#export FLEXPATH="--with-flexpath=/ccs/proj/e2e/chaos/titan/gnu"
export FLEXPATH="--with-flexpath=$FLEXPATH_DIR"
#module swap gcc gcc/4.4.4
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/xk6/cray"
else
unset LDFLAGS
unset EXTRA_LIBS
unset EXTRA_CFLAGS
fi
CFLAGS="-g -fPIC ${EXTRA_CFLAGS}" LDFLAGS="$LDFLAGS $CRAY_RCA_POST_LINK_OPTS" \
${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/chester.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-cray-pmi=/opt/cray/pmi/default \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--with-dataspaces=$DATASPACES_DIR \
--with-dimes=$DATASPACES_DIR \
$FLEXPATH \
$WITHALACRITY \
$WITHFASTBIT \
--without-infiniband
# --with-lustre=/opt/xt-lustre-ss/2.2_1.6.5/usr \
# --with-dmalloc=/ccs/proj/e2e/qliu/dmalloc.$TARGET \
# --enable-research-transports \
# --with-netcdf=/opt/cray/netcdf/3.6.2/netcdf-${TARGET} \
# --with-nc4par=/opt/cray/netcdf-hdf5parallel/4.0.1.3/netcdf-hdf5parallel-$TARGET \
# --with-phdf5=/opt/cray/hdf5-parallel/1.8.4.1/hdf5-parallel-$TARGET \
# --with-hdf5=/sw/xt5/hdf5/1.8.2/cnl2.1_gnu7.2.3 \
# --with-hdf5=/sw/xt5/hdf5/1.8.2/cnl2.1_gnu4.2.0 \
# --with-cray-ugni-incdir=/opt/cray/gni-headers/2.1-1.0400.4351.3.1.gem/include \
elif [ `hostname -f | cut -c 1-9` == "summitdev" ]; then
#####################
# SUMMITDEV IBM #
#####################
MLIST=`module list 2>&1 ` #| grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
TARGET=`echo $MLIST | grep " xl\/" | sed "s/^.* xl\/.*/xl/"`
if [ -z $TARGET ]; then
TARGET=`echo $MLIST | grep " pgi\/" | sed "s/^.* pgi\/.*/pgi/"`
if [ -z $TARGET ]; then
TARGET=`echo $MLIST | grep " gcc\/" | sed "s/^.* gcc\/.*/gcc/"`
if [ -z $TARGET ]; then
TARGET=`echo $MLIST | grep " clang\/" | sed "s/^.* clang\/.*/clang/"`
fi
fi
fi
echo "Configure on Summitdev for $TARGET env."
unset WITH_DATASPACES
FORTRAN_BUILD="--enable-fortran"
if [ "$TARGET" == "xl" ]; then
export MPICC=mpicc
export MPCXX=mpic++
export MPIFC=mpif90
export CFLAGS="-g -O0"
export FC=xlf90
export CC=xlc
export CXX=xlC
#export LIBS="-lrdmacm -libverbs"
DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/xl
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
elif [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export FC=pgf90
export CXX=pgc++
export MPICC=mpicc
export MPCXX=mpic++
export MPIFC=mpif90
export CFLAGS="-g -O0"
#DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/pgi
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
elif [ "$TARGET" == "gcc" ]; then
export CC=gcc
export FC=gfortran
export CXX=g++
export MPICC=mpicc
export MPCXX=mpic++
export MPIFC=mpif90
export CFLAGS="-g -O0"
DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/gcc
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
elif [ "$TARGET" == "clang" ]; then
export CC=clang
export CXX=clang++
export MPICC=mpicc
export MPCXX=mpic++
export CFLAGS="-g -O0"
DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/clang
FORTRAN_BUILD="--disable-fortran"
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
fi
${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/summitdev.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
$FORTRAN_BUILD \
--without-datatap \
$WITH_DATASPACES
elif [ `hostname | cut -c 1-4` == "sith" ]; then
########
# Sith #
########
#source /etc/profile.d/modules.sh
TARGET=`module list 2>&1 | grep "PE"- | sed "s/^.*PE-\([a-z]*\).*/\1/"`
if [ -z "$TARGET" ]; then
echo "Cannot determine Programming environment. Exit"
exit 1
fi
echo "Configure on SITH for $TARGET env. for user ${USER}"
module unload hdf5
module unload netcdf
module unload python
#module unload PE-gnu
#module unload PE-pgi
#module unload PE-intel
#module unload PE-pathscale
#module unload pgi gcc intel pathscale
#module load PE-$TARGET
module load python
# Use both seq hdf5 (for utils) and
# parallel hdf5 (for PHDF5 method)
module load hdf5/1.8.10
SEQ_HDF5_DIR=$HDF5_DIR
SEQ_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
module load hdf5/1.8.10_par
PAR_HDF5_DIR=$HDF5_DIR
PAR_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
# Seq. and Parallel NetCDF 4
module load netcdf/4.1.3
SEQ_NC_DIR=$NETCDF_DIR
SEQ_NC_CLIB=$NETCDF_CLIB
module unload netcdf
module load netcdf/4.1.3_par
PAR_NC_DIR=$NETCDF_DIR
PAR_NC_CLIB=$NETCDF_CLIB
module unload netcdf
#module load szip
module load bzip2
module unload dataspaces
unset DATASPACES_DIR
module load dataspaces/1.6.0
export MPICC=mpicc
export MPICXX=mpiCC
export MPIFC=mpif90
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-g -O0 -fPIC"
export CXXFLAGS="-g -O0 -fPIC"
export FCFLAGS="-g -O0 -fPIC"
WITHFLEX=""
WITHFGR=""
WITHFASTBIT=""
WITHALACRITY=""
WITHSZ=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgc++
export FC=pgf90
WITHFLEX="--with-flexpath=/ccs/proj/e2e/chaos/sith/$TARGET"
WITHFGR="--with-fgr=/ccs/proj/e2e/qliu/tap"
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/sith/pgi"
WITHFASTBIT="--with-fastbit=/sw/redhat6/fastbit/svn/rhel6_gnu4.4.7"
WITHSZ="--with-sz=/ccs/proj/e2e/SZ/1.4.10.0/sith/pgi16.9"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/sith-tcp/1.6.pgi"
#DATASPACES_DIR="/ccs/home/hbui/usr/software/dataspaces-dev"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
#export CFLAGS="$CFLAGS -gdwarf-3"
#export FCFLAGS="$FCFLAGS -gdwarf-3"
WITHFLEX="--with-flexpath=/ccs/proj/e2e/chaos/sith/$TARGET"
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/sith/gnu"
WITHFASTBIT="--with-fastbit=/sw/redhat6/fastbit/svn/rhel6_gnu4.8.2"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/sith-tcp/1.6.gnu"
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/sith/intel"
WITHFASTBIT="--with-fastbit=/sw/redhat6/fastbit/svn/rhel6_gnu4.8.2"
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
$SRCDIR/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/sith.$TARGET \
--config-cache \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-research-transports \
--with-lustre \
$WITHSZ
#--with-zlib \
#--with-bzip2=$BZIP2_DIR \
#--with-dataspaces=$DATASPACES_DIR \
#$WITHFLEX \
#$WITHFASTBIT \
#$WITHALACRITY \
#--with-aplod=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-isobar=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-hdf5=${SEQ_HDF5_DIR} \
#--with-hdf5-libs="${SEQ_HDF5_CLIB}" \
#--with-netcdf=${SEQ_NC_DIR} \
#--with-netcdf-libs="${SEQ_NC_CLIB}" \
#--with-dimes=$DATASPACES_DIR \
#--with-glib=/ccs/proj/e2e/qliu/glib
#$WITHFGR \
#--with-szip=$SZIP_DIR \
#--with-phdf5=${PAR_HDF5_DIR} \
#--with-phdf5-libs="${PAR_HDF5_CLIB}" \
#--with-nc4par=${PAR_NC_DIR} \
#--with-nc4par-libs="${PAR_NC_CLIB}" \
#--with-dmalloc=/ccs/proj/e2e/qliu/dmalloc.sith.$TARGET
#--with-dmalloc=/ccs/proj/e2e/pnorbert/dmalloc.$TARGET
#--enable-shared --disable-static
#--without-datatap #--without-infiniband
#--with-dmalloc=/ccs/proj/e2e/pnorbert/dmalloc.$TARGET
#--with-datatap=/ccs/home/habbasi/work/ewok/
#--enable-datatap=ib
elif [ `hostname | cut -c 1-4` == "yona" ]; then
########
# Yona #
########
source /etc/profile.d/modules.sh
TARGET=`module list 2>&1 | grep "PE"- | sed "s/^.*PE-\([a-z]*\).*/\1/"`
echo "Configure on Yona for $TARGET env."
module unload hdf5
module unload netcdf
module unload PE-gnu
module unload PE-pgi
module unload PE-intel
module unload PE-pathscale
module unload pgi gcc intel pathscale
#module unload python
module load PE-$TARGET
#module load python
# Use both seq hdf5 (for utils) and
# parallel hdf5 (for PHDF5 method)
module load hdf5/1.8.5
SEQ_HDF5_DIR=$HDF5_DIR
SEQ_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
#module load hdf5/1.8.5_par
#PAR_HDF5_DIR=$HDF5_DIR
#PAR_HDF5_CLIB=$HDF5_CLIB
#module unload hdf5
# Seq. and Parallel NetCDF 4
module load netcdf/3.6.2
SEQ_NC_DIR=$NETCDF_DIR
SEQ_NC_CLIB=$NETCDF_CLIB
module unload netcdf
#module load netcdf/4.1.1_par
#PAR_NC_DIR=$NETCDF_DIR
#PAR_NC_CLIB=$NETCDF_CLIB
#module unload netcdf
export MPICC=mpicc
export MPICXX=mpiCC
export MPIFC=mpif90
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
elif [ "$TARGET" == "intel" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
export CFLAGS="-g -fPIC"
${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/yona.$TARGET \
--config-cache \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-research-transports \
--with-hdf5=${SEQ_HDF5_DIR} \
--with-hdf5-libs="${SEQ_HDF5_CLIB}" \
--with-netcdf=${SEQ_NC_DIR} \
--with-netcdf-libs="${SEQ_NC_CLIB}" \
--with-lustre=/usr \
--without-datatap --without-infiniband
#--with-phdf5=${PAR_HDF5_DIR} \
#--with-phdf5-libs="${PAR_HDF5_CLIB}" \
#--with-nc4par=${PAR_NC_DIR} \
#--with-nc4par-libs="${PAR_NC_CLIB}" \
#--with-dmalloc=/ccs/proj/e2e/pnorbert/dmalloc.$TARGET
#--with-datatap=/ccs/home/habbasi/work/ewok/
#--enable-datatap=ib
elif [ `hostname | cut -c 1-5` == "theta" ]; then
##########
# THETA #
##########
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
CPUARCH=`module list 2>&1 | grep -e craype-broadwell -e craype-haswell -e craype-mic-knl -e craype-ivybridge -e craype-sandybridge -e craype-intel-knc | sed -e "s/.*craype-//"`
echo "Configure on THETA for $TARGET env. for $CPUARCH CPU"
export MPICC=cc
export MPICXX=CC
export MPIFC=ftn
module unload darshan
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
WITHDART=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
export LDFLAGS="-pgc++libs"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
export LDFLAGS=""
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export LDFLAGS=""
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
export CC=cc
export CXX=CC
export FC=ftn
export LDFLAGS=""
export EXTRA_CFLAGS="-h gnu"
else
echo "TARGET must be one of [ pgi | gnu | intel | cray ]"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-fPIC ${EXTRA_CFLAGS}"
${SRCDIR}/configure --prefix=/home/pnorbert/sw/adios/1.12/theta/$TARGET.$CPUARCH \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-cray-pmi-incdir=/opt/cray/pmi/default/include \
--with-cray-pmi-libdir=/opt/cray/pmi/default/lib64 \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--without-infiniband \
--without-hdf5 --without-netcdf
elif [ `hostname -f | cut -c 1-4` == "mira" -o `hostname -f | cut -c 1-5` == "cetus" ]; then
#####################
# MIRA BlueGene #
#####################
echo "Configure on Mira (BlueGene/Q)"
#export MPICC=mpicc
#export MPIFC=mpif90
#export CFLAGS=""
#export FC=gfortran
#export CC=gcc
#export FCFLAGS="-funderscoring"
export MPICC=mpixlc_r
export MPIFC=mpixlf90_r
export CFLAGS=""
export FC=xlf90_r
export CC=xlc_r
${SRCDIR}/configure --prefix=/home/pnorbert/sw/adios/xl \
--disable-maintainer-mode \
--disable-timers \
--enable-dependency-tracking \
--without-datatap --without-infiniband --with-bgq
elif [ `hostname -f | cut -c 1-5` == "vesta" ]; then
######################
# VESTA BlueGene #
######################
echo "Configure on Vesta (BlueGene/Q)"
export MPICC=mpixlc_r
export MPIFC=mpixlf90
export CFLAGS=""
export FC=bgxlf90
export CC=bgxlc
${SRCDIR}/configure --prefix=/home/qliu/ADIOS \
--disable-maintainer-mode \
--enable-dependency-tracking \
--without-datatap --without-infiniband --with-bgq
elif [ `hostname | cut -c 1-4` == "cori" ]; then
##########
# CORI #
##########
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
CPUARCH=`module list 2>&1 | grep -e craype-broadwell -e craype-haswell -e craype-mic-knl -e craype-ivybridge -e craype-intel-knc | sed -e "s/.*craype-//"`
echo "Configure on CORI for $TARGET env. for $CPUARCH CPU"
export MPICC=cc
export MPICXX=CC
export MPIFC=ftn
module unload darshan
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
module load python
WITHDART=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
export LDFLAGS="-pgcpplibs"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
export LDFLAGS=""
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export LDFLAGS=""
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
export CC=cc
export CXX=CC
export FC=ftn
export LDFLAGS=""
export EXTRA_CFLAGS="-h gnu"
else
echo "TARGET must be one of [ pgi | gnu | intel | cray ]"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-fPIC ${EXTRA_CFLAGS}"
${SRCDIR}/configure --prefix=/global/homes/p/pnorbert/adios/1.12/cori/$TARGET.$CPUARCH \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-lustre=/usr \
--with-cray-pmi-incdir=/opt/cray/pmi/default/include \
--with-cray-pmi-libdir=/opt/cray/pmi/default/lib64 \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--without-infiniband \
--without-hdf5 --without-netcdf
elif [ `hostname | cut -c 1-6` == "edison" ]; then
##########
# EDISON #
##########
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
echo "Configure on EDISON for $TARGET env."
export MPICC=cc
export MPICXX=CC
export MPIFC=ftn
module unload darshan
module unload automake
module unload autoconf
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
module unload PrgEnv-gnu
module unload PrgEnv-pgi
module unload PrgEnv-pathscale
module unload PrgEnv-cray
module load PrgEnv-$TARGET
module swap cray-libsci
module unload darshan
module load automake/1.15
module load autoconf
module load python
WITHDART=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
export LDFLAGS="-pgcpplibs"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
export LDFLAGS=""
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export LDFLAGS=""
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
export CC=cc
export CXX=CC
export FC=ftn
export LDFLAGS=""
export EXTRA_CFLAGS="-h gnu"
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-fPIC ${EXTRA_CFLAGS}"
${SRCDIR}/configure --prefix=/global/homes/p/pnorbert/adios/master/edison/$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-lustre=/usr \
--with-cray-pmi-incdir=/opt/cray/pmi/default/include \
--with-cray-pmi-libdir=/opt/cray/pmi/default/lib64 \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--without-infiniband \
--without-hdf5 --without-netcdf
elif [ `hostname | cut -c 1-4` == "dyn9" -o `hostname | cut -c 1-3` == "pnb" ]; then
#######
# Mac #
#######
echo "Configure on Mac"
# but using Apple's default gcc compiler
# export OMPI_CC=$CC
# export OMPI_FC=$FC
# export OMPI_CXX=$CXX
# Installed Homebrew, gcc/gfortran 5.3.0 and OpenMPI 1.10.2 in /usr/local
# But should work with default mpicc and gcc, using --disable-fortran or with Homebrew gfortran
#
unset WITHZFP # build from the included zfp source
USE_GCC5=false
if [ $USE_GCC5 == "true" ]; then
# If want to use gcc/gfortran 5.3.0
export CC=/usr/local/bin/gcc-5
export CXX=/usr/local/bin/g++-5
export FC=/usr/local/bin/gfortran
export OMPI_CC=/usr/local/bin/gcc-5
export OMPI_CXX=/usr/local/bin/g++-5
export OMPI_FC=/usr/local/bin/gfortran
export WITHALACRITY="--with-alacrity=/opt/alacrity/gcc5"
export WITHFASTBIT="--without-fastbit"
export WITHFLEXPATH="--without-flexpath"
export WITHDATASPACES="--without-dataspaces --without-dimes"
#export WITHZFP="--without-zfp"
# ALACRITY, FASTBIT are C++ lib so we need to link with the actual libstdc++
# if the automatically added -lstdc++ does not work
#export LIBS="/usr/local/Cellar/gcc/5.3.0/lib/gcc/5/libstdc++.dylib"
echo "Configure using gcc-5"
else
# If want to use clang C/C++ and gfortran 5.3.0
export CC=/usr/bin/gcc
export CXX=/usr/bin/g++
export FC=/usr/local/bin/gfortran
unset OMPI_CC
unset OMPI_CXX
unset OMPI_FC
# export WITHALACRITY="--with-alacrity=/opt/alacrity/clang"
# export WITHFASTBIT="--with-fastbit=/opt/fastbit"
export WITHDATASPACES="--with-dataspaces=/opt/dataspaces --without-dimes"
export WITHFLEXPATH="--with-flexpath=/opt/chaos"
#export WITHZFP="--with-zfp=/Users/pnb/scratch/zfp-0.5.0"
echo "Configure using clang"
# Problem: test/test_src/selection_api.F90 link will fail because
# gfortran is used which finds the gcc-5 libstdc++ library instead of the system libstdc++
# Manual fix: use mpif90 for that build command, or use "gfortran ... -Wl,-flat_namespace" command
fi
# The rest is common for all
export MPICC=/usr/local/bin/mpicc
export MPIFC=/usr/local/bin/mpif90
export MPICXX=/usr/local/bin/mpicxx
export CFLAGS="-g -O0 -DO_LARGEFILE=0 -fno-common -Wall"
export CXXFLAGS="-g -O0"
export FCFLAGS="-g -O0"
${SRCDIR}/configure --prefix=/opt/adios --disable-shared \
--with-zlib \
${WITHALACRITY} \
${WITHFASTBIT} \
${WITHZFP} \
${WITHDATASPACES} \
${WITHFLEXPATH} \
--with-phdf5=/usr/local
# --disable-mpi --disable-write --disable-fortran \
# --with-netcdf=/opt/netcdf \
# --with-hdf5=/opt/hdf5.seq
elif [ `hostname | cut -c 1-7` == "ubuntu" ]; then
#########################
# Scott's ubuntu laptop #
#########################
echo "Configure on UBUNTU"
export CC=mpicc
${SRCDIR}/configure --prefix=/usr/local/adios \
--enable-dependency-tracking \
#--with-hdf5=/usr/local/hdf5-serial\
#--with-phdf5=/usr/local \
#--with-netcdf=/usr
elif [ `hostname | cut -c 1-13` == "whoopingcough" ]; then
#########################
# Dave's workstation #
#########################
echo "Configure on Whoopingcough"
export CC=mpicc
export CFLAGS="-fPIC -g"
${SRCDIR}/configure --prefix=/apps/adios/install \
--enable-dependency-tracking \
--without-netcdf --without-nc4par --without-hdf5 --without-phdf5 \
--with-dataspaces=/apps/dataspaces
#--with-hdf5=/usr/local/hdf5-serial\
#--with-phdf5=/usr/local \
elif [ `hostname | cut -c 1-6` == "tomato" ]; then
#########################
# Todd's ubuntu laptop #
#########################
echo "Configure on UBUNTU"
export CC=mpicc
${SRCDIR}/configure --prefix=/home/thkorde/local \
--enable-dependency-tracking \
--with-phdf5=/home/thkorde/local \
--with-hdf5=/home/thkorde/local \
--with-netcdf=/home/thkorde/local
elif [ `hostname | cut -c 1-4` == "qliu" ]; then
#########################
# Gary's ubuntu laptop #
#########################
echo "Configure on UBUNTU"
export CC=mpicc
export CFLAGS="-g -O0 -fPIC"
${SRCDIR}/configure --prefix=/home/qliu/ADIOS \
--enable-dependency-tracking \
--with-phdf5=/home/thkorde/local \
#--with-hdf5=/home/thkorde/local \
#--with-netcdf=/home/thkorde/local
elif [ `hostname | cut -c 1-2` == "ln" ]; then
#######################
# Tianhe-1A #
#######################
echo "Configure on Tianhe-1A."
#export MPICC=
#export MPICXX=
#export MPIFC=
export CC=icc
export CXX=icpc
export FC=ifort
${SRCDIR}/configure --prefix=/vol6/home/Jeremy/adios-install \
--enable-dependency-tracking \
--enable-skel-timing \
--disable-maintainer-mode
#--with-phdf5=/opt/hdf5-1.8.12-parallel \
#--with-hdf5=/opt/hdf5-1.8.12 \
#--with-netcdf=/opt/netcdf-3.6.3 \
#--with-zlib=/opt/zlib \
#--with-szip=/opt/szip-2.1 \
#--with-bzip2=/usr/lib/i386-linux-gnu \
#--with-isobar=/opt/isobar \
#--with-flexpath=/opt/chaos
elif [ `hostname | cut -c 1-9` == "PC0098504" ]; then
#######################
# Linux PC #
#######################
echo "Configure on Linux PC."
export MPICC=mpicc
export MPICXX=mpicxx
export MPIFC=mpif90
export CC=gcc
export CXX=g++
export FC=gfortran
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export LDFLAGS="-lpthread"
export CFLAGS="-g -O0 -fPIC -Wno-int-to-pointer-cast -Wno-pointer-to-int-cast"
${SRCDIR}/configure --prefix=/opt/adios1 \
--enable-dependency-tracking \
--enable-timers \
--disable-timer-events
elif [ `hostname | cut -c 1-7` == "adiosVM" ]; then
#######################
# ADIOS Virtual Box #
#######################
echo "Configure on ADIOS VirtualBox."
export MPICC=mpicc
export MPICXX=mpicxx
export MPIFC=mpif90
export CC=gcc
export CXX=g++
export FC=gfortran
export CFLAGS="-g -O0 -fPIC -Wno-int-to-pointer-cast -Wno-pointer-to-int-cast"
if [ $BUILD_FULL == "true" ]; then
${SRCDIR}/configure --prefix=/opt/adios1 \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-timers \
--disable-timer-events \
--with-zlib \
--with-bzip2 \
--with-lz4 \
--with-sz=/opt/SZ/1.4.12.3 \
--with-blosc=/opt/blosc \
--without-szip \
--with-isobar=/opt/isobar \
--with-flexpath=/opt/korvo/dev-static \
--with-dataspaces=/opt/dataspaces --without-infiniband \
--with-fastbit=/opt/fastbit \
--with-alacrity=/opt/alacrity \
--with-hdf5=/opt/hdf5-1.8.17 \
--with-phdf5=/opt/hdf5-1.8.17-parallel \
--with-netcdf=/opt/netcdf-4.4.0
# --with-mgard=/home/adios/work/Software/MGARD \
# --with-zchecker=/opt/Z-checker/0.1.2 \
else
${SRCDIR}/configure --prefix=/opt/adios1/lean \
--disable-maintainer-mode \
--enable-dependency-tracking \
--without-infiniband \
--disable-timers --disable-timer-events
fi
else
echo "Could not determine what machine is this."
echo "This script is for configuring adios on the authors' machines."
echo "You can study it to figure out how to configure adios on your system."
fi
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