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/*
* ADIOS is freely available under the terms of the BSD license described
* in the COPYING file in the top level directory of this source distribution.
*
* Copyright (c) 2008 - 2009. UT-BATTELLE, LLC. All rights reserved.
*/
/* ADIOS C test:
* Write two groups at alternative steps, different variables (a vs b)
* Then read them all and check if they are correct.
*
* How to run: mpirun -np <N> write_alternate
* Output: write_alternate.bp
*
*/
#include <stdio.h>
#include <stdlib.h>
#include <stdint.h>
#include <string.h>
#include "adios.h"
#include "adios_read.h"
#ifdef DMALLOC
#include "dmalloc.h"
#endif
#define log(...) fprintf (stderr, "[rank=%3.3d, line %d]: ", rank, __LINE__); fprintf (stderr, __VA_ARGS__); fflush(stderr);
#define printE(...) fprintf (stderr, "[rank=%3.3d, line %d]: ERROR: ", rank, __LINE__); fprintf (stderr, __VA_ARGS__); fflush(stderr);
static const char FILENAME[] = "two_groups.bp";
#define VALUE(rank, step) (rank * 100 + step)
#define VALUE0(step) (step)
/* Variables to write */
int a0;
/* Variables to read */
int ra, rb, rc;
MPI_Comm comm = MPI_COMM_WORLD;
int rank;
int size;
int write_group (int i);
int read_file ();
int read_by_group ();
int main (int argc, char ** argv)
{
int err,i ;
MPI_Init (&argc, &argv);
MPI_Comm_rank (comm, &rank);
MPI_Comm_size (comm, &size);
adios_init ("two_groups.xml", comm);
err = adios_read_init_method(ADIOS_READ_METHOD_BP, comm, "verbose=2");
if (err) {
printE ("%s\n", adios_errmsg());
}
for (i=0; i<2; i++) {
if (!err) {
a0 = i;
err = write_group (i);
}
}
if (!err)
err = read_file ();
if (!err)
err = read_by_group ();
adios_finalize (rank);
MPI_Finalize ();
return err;
}
int write_group (int step)
{
int64_t fh;
uint64_t groupsize=0, totalsize;
log ("Write group %d to %s\n", step, FILENAME);
adios_open (&fh, (step==1 ? "g2" : "g1"), FILENAME, (step==0 ? "w" : "a"), comm);
groupsize = sizeof(int); // a scalar only
adios_group_size (fh, groupsize, &totalsize);
if (step == 0) {
adios_write (fh, "a0", &a0);
} else if (step == 1) {
adios_write (fh, "b0", &a0);
} else {
adios_write (fh, "c0", &a0);
}
adios_close (fh);
MPI_Barrier (comm);
return 0;
}
#define CHECK_VARINFO(VARNAME, NDIM, NSTEPS) \
vi = adios_inq_var (f, VARNAME); \
if (vi == NULL) { \
printE ("No such variable " VARNAME "\n"); \
err = 101; \
goto endread; \
} \
if (vi->ndim != NDIM) { \
printE ("Variable " VARNAME " has %d dimensions, but expected %d\n", vi->ndim, NDIM); \
err = 102; \
goto endread; \
} \
if (vi->nsteps != NSTEPS) { \
printE ("Variable " VARNAME " has %d steps, but expected %d\n", vi->nsteps, NSTEPS); \
err = 103; \
/*goto endread; */\
} \
adios_free_varinfo (vi);
#define CHECK_ATTR(ATTRNAME, VAL) \
vi = adios_get_attr (f, ATTRNAME, atype, asize); \
if (vi == NULL) { \
printE ("No such variable " VARNAME "\n"); \
err = 101; \
goto endread; \
} \
if (vi->ndim != NDIM) { \
printE ("Variable " VARNAME " has %d dimensions, but expected %d\n", vi->ndim, NDIM); \
err = 102; \
goto endread; \
} \
if (vi->nsteps != NSTEPS) { \
printE ("Variable " VARNAME " has %d steps, but expected %d\n", vi->nsteps, NSTEPS); \
err = 103; \
/*goto endread; */\
} \
adios_free_varinfo (vi);
#define CHECK_SCALAR(VARNAME, VAR, VALUE, STEP) \
if (VAR != VALUE) { \
printE (#VARNAME " step %d: wrote %d but read %d\n",STEP,VALUE,VAR);\
err = 104; \
/*goto endread;*/\
}
#define CHECK_ARRAY(VARNAME,A,N,VALUE,STEP,i) \
for (i=0;i<N;i++) \
if (A[i] != VALUE) { \
printE (#VARNAME "[%d] step %d: wrote %d but read %d\n",i,STEP,VALUE,A[i]);\
err = 104; \
/*goto endread;*/\
break; \
}
void reset_readvars()
{
ra = -1;
rb = -1;
rc = -1;
}
int read_file ()
{
ADIOS_SELECTION *sel0;
ADIOS_FILE * f;
ADIOS_VARINFO * vi;
int err=0;
uint64_t start[3] = {0,0,0};
uint64_t count[3] = {1,1,1};
uint64_t ndim;
reset_readvars();
log ("Read and check data in %s\n", FILENAME);
f = adios_read_open_file (FILENAME, ADIOS_READ_METHOD_BP, comm);
if (f == NULL) {
printE ("Error at opening file: %s\n", adios_errmsg());
return 1;
}
sel0 = adios_selection_boundingbox (0, start, count);
log (" Check variable definitions... %s\n", FILENAME);
CHECK_VARINFO("a0", 0, 1)
CHECK_VARINFO("b0", 0, 1)
//CHECK_VARINFO("c0", 0, 1)
log (" Check variables a0,b0...\n");
adios_schedule_read (f, sel0, "a0", 0, 1, &ra);
adios_schedule_read (f, sel0, "b0", 0, 1, &rb);
//adios_schedule_read (f, sel0, "c0", 0, 1, &rc);
adios_perform_reads (f, 1);
CHECK_SCALAR (a0, ra, 0, 0)
CHECK_SCALAR (b0, rb, 1, 0)
//CHECK_SCALAR (c0, rc, 2, 0)
endread:
adios_selection_delete (sel0);
adios_read_close(f);
MPI_Barrier (comm);
return err;
}
int read_by_group ()
{
ADIOS_SELECTION *sel0;
ADIOS_FILE * f;
ADIOS_VARINFO * vi;
int err=0;
uint64_t start[3] = {0,0,0};
uint64_t count[3] = {1,1,1};
uint64_t ndim;
reset_readvars();
log ("Read and check data in %s\n", FILENAME);
f = adios_read_open_file (FILENAME, ADIOS_READ_METHOD_BP, comm);
if (f == NULL) {
printE ("Error at opening file: %s\n", adios_errmsg());
return 1;
}
sel0 = adios_selection_boundingbox (0, start, count);
log (" Limit view to first group only\n");
err = adios_group_view (f, 0);
if (err) {
printE ("Error in adios_group_view: %s\n", adios_errmsg());
goto endread;
}
log (" Check variable definitions... %s\n", FILENAME);
CHECK_VARINFO("a0", 0, 1)
//CHECK_VARINFO("c0", 0, 1)
log (" Check variables a0...\n");
adios_schedule_read (f, sel0, "a0", 0, 1, &ra);
//adios_schedule_read (f, sel0, "c0", 0, 1, &rc);
adios_perform_reads (f, 1);
CHECK_SCALAR (a0, ra, 0, 0)
//CHECK_SCALAR (c0, rc, 2, 0)
log (" Limit view to second group only\n");
err = adios_group_view (f, 1);
if (err) {
printE ("Error in adios_group_view: %s\n", adios_errmsg());
goto endread;
}
log (" Check variable definitions... %s\n", FILENAME);
CHECK_VARINFO("b0", 0, 1)
log (" Check variables b0...\n");
adios_schedule_read (f, sel0, "b0", 0, 1, &rb);
adios_perform_reads (f, 1);
CHECK_SCALAR (b0, rb, 1, 0)
endread:
adios_selection_delete (sel0);
adios_read_close(f);
MPI_Barrier (comm);
return err;
}
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