File: param.in

package info (click to toggle)
aevol 9.3.0-1
  • links: PTS, VCS
  • area: main
  • in suites: sid
  • size: 3,176 kB
  • sloc: cpp: 26,650; ansic: 1,237; sh: 582; python: 545; makefile: 31
file content (38 lines) | stat: -rw-r--r-- 1,014 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
###################################
#         AEVOL PARAMETERS        #
###################################

########## Size of the initial random chromosome to generate ##########
CHROMOSOME_INITIAL_LENGTH   5000

########## Random generator setup (for reproducibility) ##########
SEED    587549

########## Population Structure ##########
GRID_SIZE   64 64

########## Selection ##########
SELECTION_SCHEME    fitness_proportionate   2000

########## Mutation rates ##########
POINT_MUTATION_RATE     1e-4
SMALL_INSERTION_RATE    1e-4
SMALL_DELETION_RATE     1e-4
MAX_INDEL_SIZE          6

########## Rearrangement rates ##########
DUPLICATION_RATE        1e-4
DELETION_RATE           1e-4
TRANSLOCATION_RATE      1e-4
INVERSION_RATE          1e-4

########## Target function ##########
ENV_SAMPLING      300
ENV_ADD_GAUSSIAN  0.5   0.33  0.025
ENV_ADD_GAUSSIAN  0.5   0.66  0.025
MAX_TRIANGLE_WIDTH      0.1

########## Recording ##########
CHECKPOINT_STEP 10000
RECORD_TREE     ON 1000
STATS_BEST      ON 100