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Source: allelecount
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 13),
libhts-dev,
libbz2-dev,
libconst-fast-perl <!nocheck>,
libdevel-cover-perl <!nocheck>,
libfile-slurp-perl <!nocheck>,
libfile-which-perl <!nocheck>,
libipc-system-simple-perl <!nocheck>,
libjson-perl <!nocheck>,
libpod-coverage-perl <!nocheck>,
libtest-fatal-perl <!nocheck>,
libtry-tiny-perl <!nocheck>,
perl
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/allelecount
Vcs-Git: https://salsa.debian.org/med-team/allelecount.git
Homepage: https://github.com/cancerit/alleleCount
Rules-Requires-Root: no
Package: allelecount
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Description: NGS copy number algorithms
Support code for NGS copy number algorithms. Takes a file of locations
and a [cr|b]am file and generates a count of coverage of each allele
[ACGT] at that location (given any filter settings).
.
The alleleCount package primarily exists to prevent code duplication
between some other projects, specifically AscatNGS and Battenberg.
Package: liballelecount-perl
Architecture: all
Section: perl
Depends: ${misc:Depends},
${perl:Depends},
libconst-fast-perl,
libdevel-cover-perl,
libfile-slurp-perl,
libfile-which-perl,
libipc-system-simple-perl,
libpod-coverage-perl,
libtest-fatal-perl,
libtry-tiny-perl,
libjson-perl
Description: Perl interface to NGS copy number algorithms
Support code for NGS copy number algorithms. Takes a file of locations
and a [cr|b]am file and generates a count of coverage of each allele
[ACGT] at that location (given any filter settings).
.
The alleleCount package primarily exists to prevent code duplication
between some other projects, specifically AscatNGS and Battenberg.
.
This package provided the Perl interface to alleleCounter providing
Sanger::CGP::AlleleCount::Genotype.
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