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Source: amap-align
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Build-Depends: debhelper (>= 8), quilt
Standards-Version: 3.9.2
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/amap-align/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/amap-align/trunk/
X-Homepage: http://bio.math.berkeley.edu/amap/ - upstream seems to be dead
Package: amap-align
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Conflicts: amap (<= 4.8-1)
Description: Protein multiple alignment by sequence annealing
AMAP is a command line tool to perform multiple alignment of peptidic
sequences. It utilizes posterior decoding, and a sequence-annealing
alignment, instead of the traditional progressive alignment method. It is
the only alignment program that allows one to control the sensitivity /
specificity tradeoff. It is based on the ProbCons source code, but
uses alignment metric accuracy and eliminates the consistency
transformation.
.
The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.
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