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Source: ampliconnoise
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
libgsl-dev,
libopenmpi-dev
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/ampliconnoise
Vcs-Git: https://salsa.debian.org/med-team/ampliconnoise.git
Homepage: https://github.com/lanzen/ampliconnoise
Package: ampliconnoise
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
mafft
Recommends: openmpi-bin
Description: removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
.
Pyronoise - does flowgram-based clustering to spot misreads
SeqNoise - removes PCR point mutations
Perseus - removes PCR chimeras without the need for a set of reference
sequences
.
Previously there was a standalone "Pyronoise" by the same authors and
this package includes an updated version. There is also a "Denoiser"
in Qiime which is related but distinct.
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