1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
|
bin_PROGRAMS = fa2dna dnaindex anfo-tool anfo
libexec_PROGRAMS = index-test file-info
lib_LTLIBRARIES = libanfo.la
dist_pkgdata_DATA = config.proto output.proto
pkginclude_HEADERS = align.h align_fwd.h anfo_common.h compress_stream.h \
concurrent_stream.h conffile.h ducttape.h index.h \
logdom.h misc_streams.h output_streams.h sequence.h \
stream.h trim.h util.h
schemedir = $(prefix)/share/elk
scheme_SCRIPTS = anfo.scm
dist_scheme_SCRIPTS = srfi-88.scm srfi-89.scm
EXTRA_DIST = anfo.scm.in
BUILT_SOURCES = config.pb.h output.pb.h config.pb.cc output.pb.cc
CLEANFILES = config.pb.h output.pb.h config.pb.cc output.pb.cc anfo.scm
AM_CFLAGS = $(protobuf_CFLAGS)
AM_CXXFLAGS = $(protobuf_CFLAGS)
LDADD = libanfo.la $(protobuf_LIBS)
libanfo_la_LDFLAGS = -version-info 0:0:0
libanfo_la_LIBADD = $(protobuf_LIBS) -lpthread
nodist_libanfo_la_SOURCES = config.pb.h output.pb.h config.pb.cc output.pb.cc
libanfo_la_SOURCES = align.cc anfo_common.cc concurrent_stream.cc \
ducttape.cc index.cc misc_streams.cc \
output_streams.cc sequence.cc stream.cc util.cc \
anfo-elk.cc fastlz.h fastlz.c
anfo_SOURCES = anfo.cc
anfo_tool_SOURCES = anfo-tool.cc
dnaindex_SOURCES = dnaindex.cc
fa2dna_SOURCES = fa2dna.cc
file_info_SOURCES = file-info.cc
index_test_SOURCES = index-test.cc
anfo.scm: anfo.scm.in
echo "; DO NOT EDIT THIS FILE! EDIT anfo.scm.in AND RUN MAKE INSTEAD!" > anfo.scm
sed -e "s#__LIBDIR__#$(libdir)#g" < $(srcdir)/anfo.scm.in >> anfo.scm
config.pb.cc: config.proto
protoc -I. -I/usr/include --cpp_out=. config.proto
output.pb.cc: output.proto
protoc -I. -I/usr/include --cpp_out=. output.proto
config.pb.h: config.pb.cc
@:
output.pb.h: output.pb.cc
@:
|
