1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
|
/*=========================================================================
Program: Advanced Normalization Tools
Module: $RCSfile: itkLabeledPointSetFileReader.h,v $
Language: C++
Date: $Date: 2009/03/04 23:10:58 $
Version: $Revision: 1.17 $
Copyright (c) ConsortiumOfANTS. All rights reserved.
See accompanying COPYING.txt or
http://sourceforge.net/projects/advants/files/ANTS/ANTSCopyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef __itkLabeledPointSetFileReader_h
#define __itkLabeledPointSetFileReader_h
#include "itkMesh.h"
#include "itkMeshSource.h"
#include "itkArray.h"
#include "itkImage.h"
#include "itkVectorContainer.h"
#include <vector>
namespace itk
{
/** \class LabeledPointSetFileReader
* \brief
* Reads a file and creates an itkMesh.
*
*/
template <class TOutputMesh>
class LabeledPointSetFileReader
: public MeshSource<TOutputMesh>
{
public:
/** Standard "Self" typedef. */
typedef LabeledPointSetFileReader Self;
typedef MeshSource<TOutputMesh> Superclass;
typedef SmartPointer<Self> Pointer;
typedef SmartPointer<const Self> ConstPointer;
/** Method for creation through the object factory. */
itkNewMacro( Self );
/** Extract dimension from the output mesh. */
itkStaticConstMacro( Dimension, unsigned int,
TOutputMesh::PointType::Dimension );
/** Run-time type information (and related methods). */
itkTypeMacro( LabeledPointSetFileReader, MeshSource );
/** Hold on to the type information specified by the template parameters. */
typedef TOutputMesh OutputMeshType;
typedef typename OutputMeshType::MeshTraits MeshTraits;
typedef typename OutputMeshType::Superclass PointSetType;
typedef typename OutputMeshType::PointType PointType;
typedef typename MeshTraits::PixelType PixelType;
typedef Array<PixelType> MultiComponentScalarType;
typedef Array<unsigned long> LineType;
typedef VectorContainer<long,
MultiComponentScalarType> MultiComponentScalarSetType;
typedef VectorContainer<long, LineType> LineSetType;
typedef Image<PixelType,
itkGetStaticConstMacro( Dimension )> LabeledPointSetImageType;
typedef std::vector<PixelType> LabelSetType;
/** Set/Get the name of the file to be read. */
itkSetStringMacro( FileName );
itkGetStringMacro( FileName );
itkSetMacro( ExtractBoundaryPoints, bool );
itkGetMacro( ExtractBoundaryPoints, bool );
itkBooleanMacro( ExtractBoundaryPoints );
/**
* Percentage of points selected randomnly
*/
itkSetClampMacro( RandomPercentage, double, 0.0, 1.0 );
itkGetConstMacro( RandomPercentage, double );
LabelSetType * GetLabelSet()
{
return &this->m_LabelSet;
}
unsigned int GetNumberOfLabels()
{
return this->m_LabelSet.size();
}
MultiComponentScalarSetType * GetMultiComponentScalars()
{
return this->m_MultiComponentScalars.GetPointer();
}
LineSetType * GetLines()
{
return this->m_Lines.GetPointer();
}
protected:
LabeledPointSetFileReader();
~LabeledPointSetFileReader()
{
}
void PrintSelf( std::ostream& os, Indent indent ) const ITK_OVERRIDE;
/** Reads the file */
void GenerateData() ITK_OVERRIDE;
bool m_ExtractBoundaryPoints;
std::string m_FileName;
double m_RandomPercentage;
LabelSetType m_LabelSet;
typename MultiComponentScalarSetType::Pointer m_MultiComponentScalars;
typename LineSetType::Pointer m_Lines;
private:
LabeledPointSetFileReader( const Self & ); // purposely not implemented
void operator=( const Self & ); // purposely not implemented
void ReadPointsFromImageFile();
void ReadPointsFromAvantsFile();
void ReadVTKFile();
void ReadPointsFromVTKFile();
void ReadScalarsFromVTKFile();
void ReadLinesFromVTKFile();
};
} // end namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
#include "itkLabeledPointSetFileReader.hxx"
#endif
#endif // _itkLabeledPointSetFileReader_h
|
