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#####################################################################################
#####################################################################################
set(THIS_TEST_NAME ANTS_CC_3)
set(OUTPUT_PREFIX ${CMAKE_BINARY_DIR}/TEST_${THIS_TEST_NAME} )
set(WARP ${OUTPUT_PREFIX}Warp.nii.gz ${OUTPUT_PREFIX}Affine.txt )
set(INVERSEWARP -i ${OUTPUT_PREFIX}Affine.txt ${OUTPUT_PREFIX}InverseWarp.nii.gz )
set(WARP_IMAGE ${CMAKE_BINARY_DIR}/${THIS_TEST_NAME}_warped.nii.gz)
set(INVERSEWARP_IMAGE ${CMAKE_BINARY_DIR}/${THIS_TEST_NAME}_inversewarped.nii.gz)
add_test(NAME ${THIS_TEST_NAME} COMMAND ANTS 2
-m CC[ ${R16_IMAGE}, ${R64_IMAGE}, 1, 4] -r Gauss[ 3, 0 ]
-t SyN[ 0.5 ] -i 50x50x30 -o ${OUTPUT_PREFIX}.nii.gz
--go-faster true )
add_test(NAME ${THIS_TEST_NAME}_WARP COMMAND WarpImageMultiTransform 2
${R64_IMAGE} ${WARP_IMAGE} ${WARP} -R ${R16_IMAGE} )
set_property(TEST ${THIS_TEST_NAME}_WARP APPEND PROPERTY DEPENDS ${THIS_TEST_NAME})
add_test(NAME ${THIS_TEST_NAME}_JPG COMMAND ConvertToJpg ${WARP_IMAGE} ${THIS_TEST_NAME}.jpg)
set_property(TEST ${THIS_TEST_NAME}_JPG APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
# add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_0 COMMAND MeasureImageSimilarity 2 0
# ${R16_IMAGE} ${WARP_IMAGE}
# ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
# 14.3283 0.1)
# set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_0 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
#
# add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_1 COMMAND MeasureImageSimilarity 2 1
# ${R16_IMAGE} ${WARP_IMAGE} ${OUTPUT_PREFIX}log.txt
# ${OUTPUT_PREFIX}metric.nii.gz
# 0.996796 0.05)
# set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_1 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
#
# add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_2 COMMAND MeasureImageSimilarity 2 2
# ${R16_IMAGE} ${WARP_IMAGE} ${OUTPUT_PREFIX}log.txt
# ${OUTPUT_PREFIX}metric.nii.gz
# -1.2204 0.05)
# set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_2 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP COMMAND WarpImageMultiTransform 2
${R16_IMAGE} ${INVERSEWARP_IMAGE} ${INVERSEWARP} -R ${R16_IMAGE}
)
set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP APPEND PROPERTY DEPENDS ${THIS_TEST_NAME})
# add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP_METRIC_0 COMMAND MeasureImageSimilarity 2 0 ${R64_IMAGE}
# ${INVERSEWARP_IMAGE} ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
# 50.4483 0.05)
# set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP_METRIC_0 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_INVERSEWARP)
#
# add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP_METRIC_1 COMMAND MeasureImageSimilarity 2 1 ${R64_IMAGE}
# ${INVERSEWARP_IMAGE} ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
# 1.0 0.05)
# set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP_METRIC_1 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_INVERSEWARP)
#
# add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP_METRIC_2 COMMAND MeasureImageSimilarity 2 2 ${R64_IMAGE}
# ${INVERSEWARP_IMAGE} ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
# 0.379897 0.05)
# set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP_METRIC_2 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_INVERSEWARP)
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