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#include "antsUtilities.h"
#include <deque>
#include <string>
#include <vector>
#include <cstdio>
#include <cmath>
#include <iostream>
#include <fstream>
namespace ants
{
// We need to ensure that only one of these exists!
// boost::iostreams::stream<ants_Sink> std::cout( ( ants_Sink() ) );
}
TRAN_FILE_TYPE
CheckFileType(const char * const str)
{
std::string filename = str;
std::string::size_type pos = filename.rfind(".");
std::string filepre = std::string(filename, 0, pos);
if (pos != std::string::npos)
{
std::string extension = std::string(filename, pos, filename.length() - 1);
if (extension == std::string(".gz"))
{
pos = filepre.rfind(".");
extension = std::string(filepre, pos, filepre.length() - 1);
}
if (extension == ".txt" || extension == ".mat" || extension == ".hdf5" || extension == ".hdf" ||
extension == ".xfm")
{
return AFFINE_FILE;
}
else
{
return DEFORMATION_FILE;
}
}
else
{
return INVALID_FILE;
}
}
TRAN_FILE_TYPE
CheckFileType(const std::string & str)
{
return CheckFileType(str.c_str());
}
void
SetAffineInvFlag(TRAN_OPT & opt, bool & set_current_affine_inv)
{
opt.do_affine_inv = set_current_affine_inv;
if (set_current_affine_inv)
{
set_current_affine_inv = false;
}
}
void
FilePartsWithgz(const std::string & filename, std::string & path, std::string & name, std::string & ext)
{
std::string extension;
std::string::size_type pos = filename.rfind(".");
std::string filepre = std::string(filename, 0, pos);
if (pos != std::string::npos)
{
extension = std::string(filename, pos, filename.length() - 1);
if (extension == std::string(".gz"))
{
pos = filepre.rfind(".");
if (pos != std::string::npos)
{
extension = std::string(filepre, pos, filepre.length() - 1) + ".gz";
filepre = std::string(filepre, 0, pos);
}
}
}
else
{
extension = std::string("");
}
ext = extension;
pos = filepre.rfind('/');
if (pos != std::string::npos)
{
path = std::string(filepre, 0, pos + 1);
name = std::string(filepre, pos + 1, filepre.length() - 1);
}
else
{
path = std::string("");
name = filepre;
}
}
bool
CheckFileExistence(const char * const str)
{
std::ifstream myfile(str);
bool b = myfile.is_open();
myfile.close();
return b;
}
// adapted from http://stackoverflow.com/questions/194465/how-to-parse-a-string-to-an-int-in-c
bool
get_a_double_number(const char * const str, double & v)
{
errno = 0;
char * end;
v = strtod(str, &end);
if ((errno == ERANGE && v == HUGE_VAL))
{
return false; // OVERFLOW
}
if ((errno == ERANGE && itk::Math::FloatAlmostEqual(v, 0.0)))
{
return false; // UNDERFLOW
}
if (*str == '\0' || *end != '\0')
{
return false; // INCONVERTIBLE;
}
return true;
}
void
DisplayOptQueue(const TRAN_OPT_QUEUE & opt_queue)
{
const itk::SizeValueType kQueueSize = opt_queue.size();
for (itk::SizeValueType i = 0; i < kQueueSize; i++)
{
std::cout << "[" << i << "/" << kQueueSize << "]: ";
switch (opt_queue[i].file_type)
{
case AFFINE_FILE:
{
std::cout << "AFFINE";
}
break;
case DEFORMATION_FILE:
{
std::cout << "FIELD";
}
break;
case IDENTITY_TRANSFORM:
{
std::cout << "IDENTITY";
}
break;
case IMAGE_AFFINE_HEADER:
{
std::cout << "HEADER";
}
break;
case INVALID_FILE:
default:
{
std::cout << "Invalid Format!!!";
}
break;
}
if (opt_queue[i].do_affine_inv)
{
std::cout << "-INV";
}
std::cout << ": " << opt_queue[i].filename << std::endl;
}
}
void
DisplayOpt(const TRAN_OPT & opt)
{
switch (opt.file_type)
{
case AFFINE_FILE:
{
std::cout << "AFFINE";
}
break;
case DEFORMATION_FILE:
{
std::cout << "FIELD";
}
break;
case IDENTITY_TRANSFORM:
{
std::cout << "IDENTITY";
}
break;
case IMAGE_AFFINE_HEADER:
{
std::cout << "HEADER";
}
break;
case INVALID_FILE:
default:
{
std::cout << "Invalid Format!!!";
}
break;
}
if (opt.do_affine_inv)
{
std::cout << "-INV";
}
std::cout << ": " << opt.filename << std::endl;
}
std::string
GetPreferredTransformFileType()
{
// return ".mat";
return ".txt";
}
void
ConvertToLowerCase(std::string & str)
{
std::transform(str.begin(), str.end(), str.begin(), tolower);
// You may need to cast the above line to (int(*)(int))
// tolower - this works as is on VC 7.1 but may not work on
// other compilers
}
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