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/*=========================================================================
Program: Advanced Normalization Tools
Copyright (c) ConsortiumOfANTS. All rights reserved.
See accompanying COPYING.txt or
https://github.com/stnava/ANTs/blob/master/ANTSCopyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef __iMathFunctions1_h
#define __iMathFunctions1_h
#include "antsUtilities.h"
#include "itkFlatStructuringElement.h"
namespace ants
{
// Templated functions that perform the work for
// iMath.cxx and iMath.cpp (in ANTSR)
// after each function, suggested default parameters are defined
#define iMathGetLargestComponentMinSize 50;
template <unsigned int ImageDimension>
typename itk::FlatStructuringElement<ImageDimension>
iMathGetFlatStructuringElement(unsigned int shape,
unsigned long radius,
bool radiusIsParametric,
unsigned int lines,
unsigned int thickness,
bool includeCenter);
#define iMathGetFlatStructuringElementShape 1;
#define iMathGetFlatStructuringElementRadius 1;
#define iMathGetFlatStructuringElementLines 3;
#define iMathGetFlatStructuringElementThickness 1;
#define iMathGetFlatStructuringElementIncludeCenter false;
#define iMathGetFlatStructuringElementRadiusIsParametric false;
// Morphological Closing
template <typename ImageType>
typename ImageType::Pointer
iMathMC(typename ImageType::Pointer image,
unsigned long radius, /*1*/
typename ImageType::PixelType closeValue,
unsigned int shape,
bool radiusIsParametric,
unsigned lines,
unsigned int thickness,
bool includeCenter);
#define iMathMCRadius 1;
#define iMathMCValue 1;
// Morphological dilation
template <typename ImageType>
typename ImageType::Pointer
iMathMD(typename ImageType::Pointer image,
unsigned long radius, /*1*/
typename ImageType::PixelType dilateValue,
unsigned int shape,
bool radiusIsParametric,
unsigned lines,
unsigned int thickness,
bool includeCenter);
#define iMathMDRadius 1;
#define iMathMDValue 1;
// Morphological erosion
template <typename ImageType>
typename ImageType::Pointer
iMathME(typename ImageType::Pointer image,
unsigned long radius, /*1*/
typename ImageType::PixelType erodeValue,
unsigned int shape,
bool radiusIsParametric,
unsigned lines,
unsigned int thickness,
bool includeCenter);
#define iMathMERadius 1;
#define iMathMEValue 1;
// Morphological opening
template <typename ImageType>
typename ImageType::Pointer
iMathMO(typename ImageType::Pointer image,
unsigned long radius, /*1*/
typename ImageType::PixelType openValue,
unsigned int shape,
bool radiusIsParametric,
unsigned lines,
unsigned int thickness,
bool includeCenter);
#define iMathMORadius 1;
#define iMathMOValue 1;
// Maurer distance - returns Euclidean distance to binary object
template <typename ImageType>
typename ImageType::Pointer
iMathMaurerDistance(typename ImageType::Pointer image, /*1*/
typename ImageType::PixelType foreground);
#define iMathMaurerDistanceForeground 1;
template <typename ImageType>
typename ImageType::Pointer
iMathLaplacian(typename ImageType::Pointer image, double sigma, bool normalize); /*1*/
#define iMathLaplacianSigma 0.5;
#define iMathLaplacianNormalize false;
// Normalize intensity values to lie in [0,1]
template <typename ImageType>
typename ImageType::Pointer
iMathNormalize(typename ImageType::Pointer image); /*1*/
template <typename ImageType>
typename ImageType::Pointer
iMathPad(typename ImageType::Pointer image, int padding); /*1*/
template <typename ImageType>
typename ImageType::Pointer
iMathPeronaMalik(typename ImageType::Pointer image,
unsigned long nIterations, /*1*/
double conductance);
#define iMathPeronaMalikConductance 0.25;
#define iMathPeronaMalikNIterations 1;
template <typename ImageType>
typename ImageType::Pointer
iMathPropagateLabelsThroughMask(typename ImageType::Pointer mask, /*1*/
typename ImageType::Pointer lables,
double stoppingValue,
unsigned int propagationMethod);
#define iMathPropagateLabelsThroughMaskStoppingValue 100.0;
#define iMathPropagateLabelsThroughMaskMethod 0;
template <typename ImageType>
typename ImageType::Pointer
iMathSharpen(typename ImageType::Pointer image); /*1*/
template <typename ImageType>
typename ImageType::Pointer
iMathTruncateIntensity(typename ImageType::Pointer image,
double lowerQ, /*1*/
double upperQ,
int nBins,
typename itk::Image<int, ImageType::ImageDimension>::Pointer maskImage);
#define iMathTruncateIntensityNBins 64;
} // namespace ants
#include "iMathFunctions1.hxx"
#endif
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