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#ifndef BASELINEREADER_H
#define BASELINEREADER_H
#include "../structures/antennainfo.h"
#include "../structures/image2d.h"
#include "../structures/mask2d.h"
#include "../structures/msmetadata.h"
#include <aocommon/polarization.h>
#include <casacore/ms/MeasurementSets/MeasurementSet.h>
#include <map>
#include <memory>
#include <optional>
#include <stdexcept>
#include <vector>
typedef std::shared_ptr<class BaselineReader> BaselineReaderPtr;
typedef std::shared_ptr<const class BaselineReader> BaselineReaderCPtr;
class BaselineReader {
public:
explicit BaselineReader(const std::string& msFile);
virtual ~BaselineReader();
/**
* Has the measurement set been modified?
*
* When it's been modified the changes need to be written to the measurement
* set. By default the destructor of the subclasses should execute this
* operation. In order to allow writing to multiple measurement sets in
* parallel the functionality is exposed.
*/
virtual bool IsModified() const = 0;
/**
* Writes the changes to the measurement set.
*
* @post @c IsModified() == @c false.
*/
virtual void WriteToMs() = 0;
/**
* Prepares the reader before usage.
*
* Some readers have a preparation step that can be done in parallel. Calling
* this function is optional; when not called manually the reader shall
* execute the preparation itself.
*
* @note When no @a progress is needed use the @ref dummy_progress_.
*/
virtual void PrepareReadWrite(class ProgressListener& progress) = 0;
static class DummyProgressListener dummy_progress_;
bool ReadFlags() const { return _readFlags; }
void SetReadFlags(bool readFlags) { _readFlags = readFlags; }
bool ReadData() const { return _readData; }
void SetReadData(bool readData) { _readData = readData; }
const std::string& DataColumnName() const { return _dataColumnName; }
void SetDataColumnName(const std::string& name) { _dataColumnName = name; }
const std::vector<aocommon::PolarizationEnum>& Polarizations() {
initializePolarizations();
return _polarizations;
}
casacore::MeasurementSet OpenMS(bool writeAccess = false) const {
if (writeAccess)
return casacore::MeasurementSet(_msMetaData.Path(),
casacore::TableLock::PermanentLockingWait,
casacore::Table::Update);
else
return casacore::MeasurementSet(
_msMetaData.Path(), casacore::TableLock::PermanentLockingWait);
}
MSMetaData& MetaData() { return _msMetaData; }
const std::map<double, size_t>& ObservationTimes(size_t sequenceId) const {
return _observationTimes[sequenceId];
}
std::vector<double> ObservationTimes(size_t startIndex,
size_t endIndex) const {
std::vector<double> times;
times.insert(times.begin(), _observationTimesVector.begin() + startIndex,
_observationTimesVector.begin() + endIndex);
return times;
}
void AddReadRequest(size_t antenna1, size_t antenna2, size_t spectralWindow,
size_t sequenceId);
void AddReadRequest(size_t antenna1, size_t antenna2, size_t spectralWindow,
size_t sequenceId, size_t startIndex, size_t endIndex) {
addReadRequest(antenna1, antenna2, spectralWindow, sequenceId, startIndex,
endIndex);
}
virtual void PerformReadRequests(class ProgressListener& progress) = 0;
void AddWriteTask(std::vector<Mask2DCPtr> flags, size_t antenna1,
size_t antenna2, size_t spectralWindow, size_t sequenceId) {
initializePolarizations();
if (flags.size() != _polarizations.size()) {
std::stringstream s;
s << "Trying to write image with " << flags.size()
<< " polarizations to a measurement set with " << _polarizations.size();
throw std::runtime_error(s.str());
}
FlagWriteRequest task;
task.flags = flags;
task.antenna1 = antenna1;
task.antenna2 = antenna2;
task.spectralWindow = spectralWindow;
task.sequenceId = sequenceId;
task.startIndex = 0;
task.endIndex = flags[0]->Width();
task.leftBorder = 0;
task.rightBorder = 0;
_writeRequests.push_back(task);
}
virtual void PerformFlagWriteRequests() = 0;
virtual void PerformDataWriteTask(std::vector<Image2DCPtr> _realImages,
std::vector<Image2DCPtr> _imaginaryImages,
size_t antenna1, size_t antenna2,
size_t spectralWindow,
size_t sequenceId) = 0;
TimeFrequencyData GetNextResult(std::vector<UVW>& uvw);
virtual size_t GetMinRecommendedBufferSize(size_t threadCount) {
return threadCount;
}
virtual size_t GetMaxRecommendedBufferSize(size_t threadCount) {
return 2 * threadCount;
}
static uint64_t MeasurementSetDataSize(const std::string& filename);
/**
* Returns an estimate of the size of the measurement set.
*
* This estimate can be used to see whether the memory reader can be used.
*
* The \a start and \a end are an optional, this allows using
* \ref Options::startTimestep and \ref Options::endTimestep in this function
* call.
*/
static uint64_t MeasurementSetIntervalDataSize(const string& filename,
std::optional<size_t> start,
std::optional<size_t> end);
void SetInterval(std::optional<size_t> start, std::optional<size_t> end) {
_intervalStart = start;
_intervalEnd = end;
if (_intervalStart) _msMetaData.SetIntervalStart(IntervalStart());
if (_intervalEnd) _msMetaData.SetIntervalEnd(IntervalEnd());
}
bool HasIntervalStart() const { return (bool)_intervalStart; }
bool HasIntervalEnd() const { return (bool)_intervalEnd; }
size_t IntervalStart() const {
if (HasIntervalStart())
return *_intervalStart;
else
return 0;
}
size_t IntervalEnd() const {
if (HasIntervalEnd())
return *_intervalEnd;
else
return _observationTimesVector.size();
}
protected:
struct ReadRequest {
int antenna1;
int antenna2;
int spectralWindow;
unsigned sequenceId;
size_t startIndex;
size_t endIndex;
};
struct FlagWriteRequest {
FlagWriteRequest() = default;
FlagWriteRequest(const FlagWriteRequest& source)
: flags(source.flags),
antenna1(source.antenna1),
antenna2(source.antenna2),
spectralWindow(source.spectralWindow),
sequenceId(source.sequenceId),
startIndex(source.startIndex),
endIndex(source.endIndex),
leftBorder(source.leftBorder),
rightBorder(source.rightBorder) {}
std::vector<Mask2DCPtr> flags;
int antenna1;
int antenna2;
int spectralWindow;
unsigned sequenceId;
size_t startIndex;
size_t endIndex;
size_t leftBorder;
size_t rightBorder;
};
struct Result {
Result() = default;
Result(const Result& source)
: _realImages(source._realImages),
_imaginaryImages(source._imaginaryImages),
_flags(source._flags),
_uvw(source._uvw),
_bandInfo(source._bandInfo) {}
std::vector<Image2DPtr> _realImages;
std::vector<Image2DPtr> _imaginaryImages;
std::vector<Mask2DPtr> _flags;
std::vector<UVW> _uvw;
BandInfo _bandInfo;
};
void initializeMeta() {
initObservationTimes();
initializePolarizations();
}
const std::vector<std::map<double, size_t>>& ObservationTimesPerSequence()
const {
return _observationTimes;
}
std::vector<ReadRequest> _readRequests;
std::vector<FlagWriteRequest> _writeRequests;
std::vector<Result> _results;
private:
BaselineReader(const BaselineReader&) = delete;
BaselineReader& operator=(const BaselineReader&) = delete;
void initializePolarizations();
void initObservationTimes();
void addReadRequest(size_t antenna1, size_t antenna2, size_t spectralWindow,
size_t sequenceId, size_t startIndex, size_t endIndex) {
ReadRequest request;
request.antenna1 = antenna1;
request.antenna2 = antenna2;
request.spectralWindow = spectralWindow;
request.sequenceId = sequenceId;
request.startIndex = startIndex;
request.endIndex = endIndex;
_readRequests.push_back(request);
}
MSMetaData _msMetaData;
std::string _dataColumnName;
bool _readData, _readFlags;
std::vector<std::map<double, size_t>> _observationTimes;
std::vector<double> _observationTimesVector;
std::vector<aocommon::PolarizationEnum> _polarizations;
std::optional<size_t> _intervalStart, _intervalEnd;
};
#endif // BASELINEREADER_H
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