1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530
|
.. Licensed to the Apache Software Foundation (ASF) under one
.. or more contributor license agreements. See the NOTICE file
.. distributed with this work for additional information
.. regarding copyright ownership. The ASF licenses this file
.. to you under the Apache License, Version 2.0 (the
.. "License"); you may not use this file except in compliance
.. with the License. You may obtain a copy of the License at
.. http://www.apache.org/licenses/LICENSE-2.0
.. Unless required by applicable law or agreed to in writing,
.. software distributed under the License is distributed on an
.. "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
.. KIND, either express or implied. See the License for the
.. specific language governing permissions and limitations
.. under the License.
.. currentmodule:: pyarrow.compute
.. _compute:
=================
Compute Functions
=================
Arrow supports logical compute operations over inputs of possibly
varying types.
The standard compute operations are provided by the :mod:`pyarrow.compute`
module and can be used directly::
>>> import pyarrow as pa
>>> import pyarrow.compute as pc
>>> a = pa.array([1, 1, 2, 3])
>>> pc.sum(a)
<pyarrow.Int64Scalar: 7>
The grouped aggregation functions raise an exception instead
and need to be used through the :meth:`pyarrow.Table.group_by` capabilities.
See :ref:`py-grouped-aggrs` for more details.
Standard Compute Functions
==========================
Many compute functions support both array (chunked or not)
and scalar inputs, but some will mandate either. For example,
``sort_indices`` requires its first and only input to be an array.
Below are a few simple examples::
>>> import pyarrow as pa
>>> import pyarrow.compute as pc
>>> a = pa.array([1, 1, 2, 3])
>>> b = pa.array([4, 1, 2, 8])
>>> pc.equal(a, b)
<pyarrow.lib.BooleanArray object at 0x7f686e4eef30>
[
false,
true,
true,
false
]
>>> x, y = pa.scalar(7.8), pa.scalar(9.3)
>>> pc.multiply(x, y)
<pyarrow.DoubleScalar: 72.54>
If you are using a compute function which returns more than one value, results
will be returned as a ``StructScalar``. You can extract the individual values by
calling the :meth:`pyarrow.StructScalar.values` method::
>>> import pyarrow as pa
>>> import pyarrow.compute as pc
>>> a = pa.array([1, 1, 2, 3])
>>> pc.min_max(a)
<pyarrow.StructScalar: [('min', 1), ('max', 3)]>
>>> a, b = pc.min_max(a).values()
>>> a
<pyarrow.Int64Scalar: 1>
>>> b
<pyarrow.Int64Scalar: 3>
These functions can do more than just element-by-element operations.
Here is an example of sorting a table::
>>> import pyarrow as pa
>>> import pyarrow.compute as pc
>>> t = pa.table({'x':[1,2,3],'y':[3,2,1]})
>>> i = pc.sort_indices(t, sort_keys=[('y', 'ascending')])
>>> i
<pyarrow.lib.UInt64Array object at 0x7fcee5df75e8>
[
2,
1,
0
]
For a complete list of the compute functions that PyArrow provides
you can refer to :ref:`api.compute` reference.
.. seealso::
:ref:`Available compute functions (C++ documentation) <compute-function-list>`.
.. _py-grouped-aggrs:
Grouped Aggregations
====================
PyArrow supports grouped aggregations over :class:`pyarrow.Table` through the
:meth:`pyarrow.Table.group_by` method.
The method will return a grouping declaration
to which the hash aggregation functions can be applied::
>>> import pyarrow as pa
>>> t = pa.table([
... pa.array(["a", "a", "b", "b", "c"]),
... pa.array([1, 2, 3, 4, 5]),
... ], names=["keys", "values"])
>>> t.group_by("keys").aggregate([("values", "sum")])
pyarrow.Table
values_sum: int64
keys: string
----
values_sum: [[3,7,5]]
keys: [["a","b","c"]]
The ``"sum"`` aggregation passed to the ``aggregate`` method in the previous
example is the ``hash_sum`` compute function.
Multiple aggregations can be performed at the same time by providing them
to the ``aggregate`` method::
>>> import pyarrow as pa
>>> t = pa.table([
... pa.array(["a", "a", "b", "b", "c"]),
... pa.array([1, 2, 3, 4, 5]),
... ], names=["keys", "values"])
>>> t.group_by("keys").aggregate([
... ("values", "sum"),
... ("keys", "count")
... ])
pyarrow.Table
values_sum: int64
keys_count: int64
keys: string
----
values_sum: [[3,7,5]]
keys_count: [[2,2,1]]
keys: [["a","b","c"]]
Aggregation options can also be provided for each aggregation function,
for example we can use :class:`CountOptions` to change how we count
null values::
>>> import pyarrow as pa
>>> import pyarrow.compute as pc
>>> table_with_nulls = pa.table([
... pa.array(["a", "a", "a"]),
... pa.array([1, None, None])
... ], names=["keys", "values"])
>>> table_with_nulls.group_by(["keys"]).aggregate([
... ("values", "count", pc.CountOptions(mode="all"))
... ])
pyarrow.Table
values_count: int64
keys: string
----
values_count: [[3]]
keys: [["a"]]
>>> table_with_nulls.group_by(["keys"]).aggregate([
... ("values", "count", pc.CountOptions(mode="only_valid"))
... ])
pyarrow.Table
values_count: int64
keys: string
----
values_count: [[1]]
keys: [["a"]]
Following is a list of all supported grouped aggregation functions.
You can use them with or without the ``"hash_"`` prefix.
.. arrow-computefuncs::
:kind: hash_aggregate
.. _py-joins:
Table and Dataset Joins
=======================
Both :class:`.Table` and :class:`.Dataset` support
join operations through :meth:`.Table.join`
and :meth:`.Dataset.join` methods.
The methods accept a right table or dataset that will
be joined to the initial one and one or more keys that
should be used from the two entities to perform the join.
By default a ``left outer join`` is performed, but it's possible
to ask for any of the supported join types:
* left semi
* right semi
* left anti
* right anti
* inner
* left outer
* right outer
* full outer
A basic join can be performed just by providing a table and a key
on which the join should be performed:
.. code-block:: python
import pyarrow as pa
table1 = pa.table({'id': [1, 2, 3],
'year': [2020, 2022, 2019]})
table2 = pa.table({'id': [3, 4],
'n_legs': [5, 100],
'animal': ["Brittle stars", "Centipede"]})
joined_table = table1.join(table2, keys="id")
The result will be a new table created by joining ``table1`` with
``table2`` on the ``id`` key with a ``left outer join``::
pyarrow.Table
id: int64
year: int64
n_legs: int64
animal: string
----
id: [[3,1,2]]
year: [[2019,2020,2022]]
n_legs: [[5,null,null]]
animal: [["Brittle stars",null,null]]
We can perform additional type of joins, like ``full outer join`` by
passing them to the ``join_type`` argument:
.. code-block:: python
table1.join(table2, keys='id', join_type="full outer")
In that case the result would be::
pyarrow.Table
id: int64
year: int64
n_legs: int64
animal: string
----
id: [[3,1,2,4]]
year: [[2019,2020,2022,null]]
n_legs: [[5,null,null,100]]
animal: [["Brittle stars",null,null,"Centipede"]]
It's also possible to provide additional join keys, so that the
join happens on two keys instead of one. For example we can add
an ``year`` column to ``table2`` so that we can join on ``('id', 'year')``:
.. code-block::
table2_withyear = table2.append_column("year", pa.array([2019, 2022]))
table1.join(table2_withyear, keys=["id", "year"])
The result will be a table where only entries with ``id=3`` and ``year=2019``
have data, the rest will be ``null``::
pyarrow.Table
id: int64
year: int64
animal: string
n_legs: int64
----
id: [[3,1,2]]
year: [[2019,2020,2022]]
animal: [["Brittle stars",null,null]]
n_legs: [[5,null,null]]
The same capabilities are available for :meth:`.Dataset.join` too, so you can
take two datasets and join them:
.. code-block::
import pyarrow.dataset as ds
ds1 = ds.dataset(table1)
ds2 = ds.dataset(table2)
joined_ds = ds1.join(ds2, keys="id")
The resulting dataset will be an :class:`.InMemoryDataset` containing the joined data::
>>> joined_ds.head(5)
pyarrow.Table
id: int64
year: int64
animal: string
n_legs: int64
----
id: [[3,1,2]]
year: [[2019,2020,2022]]
animal: [["Brittle stars",null,null]]
n_legs: [[5,null,null]]
.. _py-filter-expr:
Filtering by Expressions
========================
:class:`.Table` and :class:`.Dataset` can
both be filtered using a boolean :class:`.Expression`.
The expression can be built starting from a
:func:`pyarrow.compute.field`. Comparisons and transformations
can then be applied to one or more fields to build the filter
expression you care about.
Most :ref:`compute` can be used to perform transformations
on a ``field``.
For example we could build a filter to find all rows that are even
in column ``"nums"``
.. code-block:: python
import pyarrow.compute as pc
even_filter = (pc.bit_wise_and(pc.field("nums"), pc.scalar(1)) == pc.scalar(0))
.. note::
The filter finds even numbers by performing a bitwise and operation between the number and ``1``.
As ``1`` is to ``00000001`` in binary form, only numbers that have the last bit set to ``1``
will return a non-zero result from the ``bit_wise_and`` operation. This way we are identifying all
odd numbers. Given that we are interested in the even ones, we then check that the number returned
by the ``bit_wise_and`` operation equals ``0``. Only the numbers where the last bit was ``0`` will
return a ``0`` as the result of ``num & 1`` and as all numbers where the last bit is ``0`` are
multiples of ``2`` we will be filtering for the even numbers only.
Once we have our filter, we can provide it to the :meth:`.Table.filter` method
to filter our table only for the matching rows:
.. code-block:: python
>>> table = pa.table({'nums': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10],
... 'chars': ["a", "b", "c", "d", "e", "f", "g", "h", "i", "l"]})
>>> table.filter(even_filter)
pyarrow.Table
nums: int64
chars: string
----
nums: [[2,4,6,8,10]]
chars: [["b","d","f","h","l"]]
Multiple filters can be joined using ``&``, ``|``, ``~`` to perform ``and``, ``or``
and ``not`` operations. For example using ``~even_filter`` will actually end up filtering
for all numbers that are odd:
.. code-block:: python
>>> table.filter(~even_filter)
pyarrow.Table
nums: int64
chars: string
----
nums: [[1,3,5,7,9]]
chars: [["a","c","e","g","i"]]
and we could build a filter that finds all even numbers greater than 5 by combining
our ``even_filter`` with a ``pc.field("nums") > 5`` filter:
.. code-block:: python
>>> table.filter(even_filter & (pc.field("nums") > 5))
pyarrow.Table
nums: int64
chars: string
----
nums: [[6,8,10]]
chars: [["f","h","l"]]
:class:`.Dataset` can similarly be filtered with the :meth:`.Dataset.filter` method.
The method will return an instance of :class:`.Dataset` which will lazily
apply the filter as soon as actual data of the dataset is accessed:
>>> dataset = ds.dataset(table)
>>> filtered = dataset.filter(pc.field("nums") < 5).filter(pc.field("nums") > 2)
>>> filtered.to_table()
pyarrow.Table
nums: int64
chars: string
----
nums: [[3,4]]
chars: [["c","d"]]
User-Defined Functions
======================
.. warning::
This API is **experimental**.
PyArrow allows defining and registering custom compute functions.
These functions can then be called from Python as well as C++ (and potentially
any other implementation wrapping Arrow C++, such as the R ``arrow`` package)
using their registered function name.
UDF support is limited to scalar functions. A scalar function is a function which
executes elementwise operations on arrays or scalars. In general, the output of a
scalar function does not depend on the order of values in the arguments. Note that
such functions have a rough correspondence to the functions used in SQL expressions,
or to NumPy `universal functions <https://numpy.org/doc/stable/reference/ufuncs.html>`_.
To register a UDF, a function name, function docs, input types and
output type need to be defined. Using :func:`pyarrow.compute.register_scalar_function`,
.. code-block:: python
import numpy as np
import pyarrow as pa
import pyarrow.compute as pc
function_name = "numpy_gcd"
function_docs = {
"summary": "Calculates the greatest common divisor",
"description":
"Given 'x' and 'y' find the greatest number that divides\n"
"evenly into both x and y."
}
input_types = {
"x" : pa.int64(),
"y" : pa.int64()
}
output_type = pa.int64()
def to_np(val):
if isinstance(val, pa.Scalar):
return val.as_py()
else:
return np.array(val)
def gcd_numpy(ctx, x, y):
np_x = to_np(x)
np_y = to_np(y)
return pa.array(np.gcd(np_x, np_y))
pc.register_scalar_function(gcd_numpy,
function_name,
function_docs,
input_types,
output_type)
The implementation of a user-defined function always takes a first *context*
parameter (named ``ctx`` in the example above) which is an instance of
:class:`pyarrow.compute.UdfContext`.
This context exposes several useful attributes, particularly a
:attr:`~pyarrow.compute.UdfContext.memory_pool` to be used for
allocations in the context of the user-defined function.
You can call a user-defined function directly using :func:`pyarrow.compute.call_function`:
.. code-block:: python
>>> pc.call_function("numpy_gcd", [pa.scalar(27), pa.scalar(63)])
<pyarrow.Int64Scalar: 9>
>>> pc.call_function("numpy_gcd", [pa.scalar(27), pa.array([81, 12, 5])])
<pyarrow.lib.Int64Array object at 0x7fcfa0e7b100>
[
27,
3,
1
]
Working with Datasets
---------------------
More generally, user-defined functions are usable everywhere a compute function
can be referred by its name. For example, they can be called on a dataset's
column using :meth:`Expression._call`.
Consider an instance where the data is in a table and we want to compute
the GCD of one column with the scalar value 30. We will be re-using the
"numpy_gcd" user-defined function that was created above:
.. code-block:: python
>>> import pyarrow.dataset as ds
>>> data_table = pa.table({'category': ['A', 'B', 'C', 'D'], 'value': [90, 630, 1827, 2709]})
>>> dataset = ds.dataset(data_table)
>>> func_args = [pc.scalar(30), ds.field("value")]
>>> dataset.to_table(
... columns={
... 'gcd_value': ds.field('')._call("numpy_gcd", func_args),
... 'value': ds.field('value'),
... 'category': ds.field('category')
... })
pyarrow.Table
gcd_value: int64
value: int64
category: string
----
gcd_value: [[30,30,3,3]]
value: [[90,630,1827,2709]]
category: [["A","B","C","D"]]
Note that ``ds.field('')._call(...)`` returns a :func:`pyarrow.compute.Expression`.
The arguments passed to this function call are expressions, not scalar values
(notice the difference between :func:`pyarrow.scalar` and :func:`pyarrow.compute.scalar`,
the latter produces an expression).
This expression is evaluated when the projection operator executes it.
Projection Expressions
^^^^^^^^^^^^^^^^^^^^^^
In the above example we used an expression to add a new column (``gcd_value``)
to our table. Adding new, dynamically computed, columns to a table is known as "projection"
and there are limitations on what kinds of functions can be used in projection expressions.
A projection function must emit a single output value for each input row. That output value
should be calculated entirely from the input row and should not depend on any other row.
For example, the "numpy_gcd" function that we've been using as an example above is a valid
function to use in a projection. A "cumulative sum" function would not be a valid function
since the result of each input row depends on the rows that came before. A "drop nulls"
function would also be invalid because it doesn't emit a value for some rows.
|